R: Converts wide format ILR transformed data to long format

convert_to_long {philr}

R Documentation

Converts wide format ILR transformed data to long format

Description

Converts wide format ILR transformed data (see philr) to long format useful in various plotting functions where long format data is required.

Usage

convert_to_long(df, labels)

Arguments

`df`	PhILR transformed data in wide format (samples by balances) (see `philr`)
`labels`	vector (of length `nrow(df)`) with labels to group samples by

Value

df in long format with columns

sample
labels
coord
value

Examples

tr <- named_rtree(5)
df <- t(rmultinom(10,100,c(.1,.6,.2,.3,.2))) + 0.65   # add a small pseudocount
colnames(df) <- tr$tip.label

df.philr <- philr(df, tr, part.weights='enorm.x.gm.counts',
      ilr.weights='blw.sqrt', return.all=FALSE)
convert_to_long(df.philr, rep(c('a','b'), 5))

[Package philr version 1.6.0 Index]