convertSifnxIds {paxtoolsr} | R Documentation

## Convert IDs in a SIFNX

### Description

Convert IDs in a SIFNX

### Usage

    convertSifnxIds(sifnx, participantType = "ProteinReference",
      idType = "NCBI Gene", mapping = NULL, naRm = TRUE)

### Arguments

`sifnx` | a SIFNX object (e.g. from the downloadPc2 function)
`participantType` | the type of participant on which the conversion will occur. Important because not all ID types apply to all entities and otherwise those entities would be labeled as missing an ID.
`idType` | an ID type for conversion (not used if mapping parameter used)
`mapping` | a two column data.frame with columns mapping$PARTICIPANT (old IDs to convert from) and mapping$ID (new IDs to convert to)
`naRm` | remove edges where NA's were introduced due to failed conversions

### Value

a SIFNX list with nodes and edges. Only edges will have converted IDs

[Package paxtoolsr version 1.14.0 Index]