TermSet-class           manage ontological data with tags and a
                        DataFrame instance
allGOterms              allGOterms: data.frame with ids and terms
c,TermSet-method        combine TermSet instances
cellTypeToGO            utilities for approximate matching of cell type
                        terms to GO categories and annotations
cleanCLOnames           obtain named character vector of terms from
                        Cell Line Ontology, omitting obsolete and
                        trailing 'cell'
demoApp                 demonstrate the use of makeSelectInput
dropStop                dropStop is a utility for removing certain
                        words from text data
fastGrep                some fields of interest are lists, and grep per
                        se should not be used - this function checks
                        and uses grep within vapply when appropriate
getCellOnto             load ontologies that may include non-ascii
                        strings and therefore cannot be in data folder
humrna                  humrna: a data.frame of SRA metadata related to
                        RNA-seq in humans
makeSelectInput         generate a selectInput control for an
                        ontologyIndex slice
minicorpus              minicorpus: a vector of annotation strings
                        found in 'study title' of SRA metadata.
nomenCheckup            repair nomenclature mismatches (to curated term
                        set) in a vector of terms
secLevGen               simple generation of children of 'choices'
                        given as terms, returned as TermSet
siblings_TAG            generate a TermSet with siblings of a given
                        term, excluding that term by default
stopWords               stopWords: vector of stop words from xpo6.com
