SnpSuperSet-class {oligoClasses} | R Documentation

## Class "SnpSuperSet"

### Description

A class to store locus-level summaries of the quantile normalized intensities, genotype calls, and genotype confidence scores

### Objects from the Class

`new("SnpSuperSet", allelea=alleleA, alleleB=alleleB, call=call, callProbability, ...)`.

### Slots

`assayData`:

  Object of class `"AssayData"` ~~

`phenoData`:

  Object of class `"AnnotatedDataFrame"` ~~

`featureData`:

  Object of class `"AnnotatedDataFrame"` ~~

`experimentData`:

  Object of class `"MIAME"` ~~

`annotation`:

  Object of class `"character"` ~~

`protocolData`:

  Object of class `"AnnotatedDataFrame"` ~~

`.__classVersion__`:

  Object of class `"Versions"` ~~

### Extends

Class `"AlleleSet"`, directly. Class `"SnpSet"`, directly. Class `"eSet"`, by class "AlleleSet", distance 2. Class `"VersionedBiobase"`, by class "AlleleSet", distance 3. Class `"Versioned"`, by class "AlleleSet", distance 4.

### Methods

No methods defined with class "SnpSuperSet" in the signature.

### Author(s)

R. Scharpf

### See Also

`AlleleSet`

### Examples

    showClass("SnpSuperSet")
    ## empty object from the class
    x <- new("matrix")
    new("SnpSuperSet", alleleA=x, alleleB=x, call=x, callProbability=x)

[Package oligoClasses version 1.42.0 Index]