mzR-package	mzR-package
analyzer	metadata
analyzer,mzRnetCDF-method	mzR-class
analyzer,mzRpwiz-method	mzR-class
analyzer,mzRramp-method	mzR-class
chromatogram	peaks
chromatogram,mzRpwiz-method	peaks
chromatogramHeader	peaks
chromatogramHeader,mzRpwiz-method	peaks
chromatograms	peaks
chromatograms,mzRpwiz-method	peaks
chromatogramsInfo	metadata
chromatogramsInfo,mzRpwiz-method	mzR-class
class:mzR	mzR-class
class:mzRident	mzR-class
class:mzRnetCDF	mzR-class
class:mzRpwiz	mzR-class
class:mzRramp	mzR-class
close	mzR-class
close,mzRnetCDF-method	mzR-class
close,mzRpwiz-method	mzR-class
close,mzRramp-method	mzR-class
copyWriteMSData	copyWriteMSData
database	metadata
database,mzRident-method	mzR-class
detector	metadata
detector,mzRnetCDF-method	mzR-class
detector,mzRpwiz-method	mzR-class
detector,mzRramp-method	mzR-class
enzymes	metadata
enzymes,mzRident-method	mzR-class
fileName	openMSfile
fileName,mzR-method	mzR-class
get3Dmap	peaks
get3Dmap,mzRpwiz-method	peaks
get3Dmap,mzRramp-method	peaks
header	peaks
header,mzRnetCDF,missing-method	peaks
header,mzRnetCDF,numeric-method	peaks
header,mzRpwiz,missing-method	peaks
header,mzRpwiz,numeric-method	peaks
header,mzRramp,missing-method	peaks
header,mzRramp,numeric-method	peaks
initializeRamp	openMSfile
initializeRamp,mzRramp-method	mzR-class
instrumentInfo	metadata
instrumentInfo,mzRnetCDF-method	mzR-class
instrumentInfo,mzRpwiz-method	mzR-class
instrumentInfo,mzRramp-method	mzR-class
ionisation	metadata
ionisation,mzRnetCDF-method	mzR-class
ionisation,mzRpwiz-method	mzR-class
ionisation,mzRramp-method	mzR-class
isInitialized	openMSfile
isInitialized,mzRnetCDF-method	mzR-class
isInitialized,mzRramp-method	mzR-class
isolationWindow	isolationWindow-methods
isolationWindow,character-method	isolationWindow-methods
isolationWindow,mzRpwiz-method	isolationWindow-methods
isolationWindow,mzRramp-method	isolationWindow-methods
isolationWindow-methods	isolationWindow-methods
length	mzR-class
length,mzRident-method	mzR-class
length,mzRnetCDF-method	mzR-class
length,mzRpwiz-method	mzR-class
length,mzRramp-method	mzR-class
manufacturer	metadata
manufacturer,mzRnetCDF-method	mzR-class
manufacturer,mzRpwiz-method	mzR-class
manufacturer,mzRramp-method	mzR-class
model	metadata
model,mzRnetCDF-method	mzR-class
model,mzRpwiz-method	mzR-class
model,mzRramp-method	mzR-class
modifications	metadata
modifications,mzRident-method	mzR-class
mzidInfo	metadata
mzidInfo,mzRident-method	mzR-class
mzR	mzR-package
mzR-class	mzR-class
mzRident-class	mzR-class
mzRnetCDF-class	mzR-class
mzRpwiz-class	mzR-class
mzRramp-class	mzR-class
nChrom	peaks
openIDfile	openMSfile
openMSfile	openMSfile
para	metadata
para,mzRident-method	mzR-class
peaks	peaks
peaks,mzRnetCDF-method	peaks
peaks,mzRpwiz-method	peaks
peaks,mzRramp-method	peaks
peaksCount	peaks
peaksCount,mzRpwiz,missing-method	peaks
peaksCount,mzRpwiz,numeric-method	peaks
peaksCount,mzRramp,missing-method	peaks
peaksCount,mzRramp,numeric-method	peaks
psms	metadata
psms,mzRident-method	mzR-class
pwiz.version	pwiz-version
runInfo	metadata
runInfo,mzRnetCDF-method	mzR-class
runInfo,mzRpwiz-method	mzR-class
runInfo,mzRramp-method	mzR-class
sampleInfo	metadata
sampleInfo,mzRpwiz-method	mzR-class
score	metadata
score,mzRident-method	mzR-class
softwareInfo	metadata
softwareInfo,mzRident-method	mzR-class
softwareInfo,mzRpwiz-method	mzR-class
sourceInfo	metadata
sourceInfo,mzRident-method	mzR-class
sourceInfo,mzRpwiz-method	mzR-class
spectra	peaks
spectra,mzRnetCDF-method	peaks
spectra,mzRpwiz-method	peaks
spectra,mzRramp-method	peaks
substitutions	metadata
substitutions,mzRident-method	mzR-class
tic	peaks
tic,mzRpwiz-method	peaks
tolerance	metadata
tolerance,mzRident-method	mzR-class
writeMSData	writeMSData
writeMSData,list,character-method	writeMSData
