| getVariants {myvariant} | R Documentation |
This is a wrapper for POST query of "/variant" service.
getVariants(hgvsids, fields=NULL, verbose=NULL, ...,
return.as=c("DataFrame", "records", "text"), myvariant)
hgvsids |
A vector, list, or comm-sep string HGVS ids |
fields |
A vector of fields to return. If fields=="all", all available fields are returned. |
verbose |
A logical turning on or off process status messages. Default = TRUE. |
... |
|
return.as |
"DataFrame" (default), "records" (list), "text" (JSON). |
myvariant |
A MyVariant object that describes how to connect to data resources. See |
returns a variant object (DataFrame, list, or JSON text) containing the queried annotations
http://docs.myvariant.info/en/latest/doc/variant_annotation_service.html#batch-queries-via-post http://docs.myvariant.info/en/latest/doc/variant_annotation_service.html#id2
getVariants
queryVariant
queryVariants
## given a list of HGVS ids
vars <- c('chr1:g.866422C>T',
'chr1:g.876664G>A',
'chr1:g.69635G>C',
'chr1:g.69869T>A',
'chr1:g.881918G>A',
'chr1:g.865625G>A',
'chr1:g.879368C>A',
'chr1:g.889226C>T',
'chr1:g.879492C>G',
'chr1:g.879423T>G',
'chr1:g.881602C>T',
'chr1:g.879115C>G',
'chr1:g.69892T>C',
'chr1:g.879381C>T',
'chr1:g.878330C>G')
## Return the list of variant object for the given list of HGVS ids.
df <- getVariants(vars, fields="dbsnp, wellderly")