# Generated by roxygen2: do not edit by hand

export("assayColorMap<-")
export("colDataColorMap<-")
export("rowDataColorMap<-")
export(ExperimentColorMap)
export(annotateEnsembl)
export(annotateEntrez)
export(assayColorMap)
export(colDataColorMap)
export(colDataPlotDefaults)
export(featAssayPlotDefaults)
export(heatMapPlotDefaults)
export(iSEE)
export(isColorMapCompatible)
export(modeGating)
export(redDimPlotDefaults)
export(rowDataColorMap)
export(rowDataPlotDefaults)
export(rowStatTableDefaults)
export(subsetPointsByGrid)
export(synchronizeAssays)
exportClasses(ExperimentColorMap)
import(SingleCellExperiment)
import(SummarizedExperiment)
importClassesFrom(S4Vectors,DataFrame)
importClassesFrom(S4Vectors,SimpleList)
importClassesFrom(SingleCellExperiment,SingleCellExperiment)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(AnnotationDbi,keytypes)
importFrom(AnnotationDbi,mapIds)
importFrom(AnnotationDbi,species)
importFrom(BiocGenerics,rownames)
importFrom(BiocGenerics,sizeFactors)
importFrom(DT,dataTableOutput)
importFrom(DT,datatable)
importFrom(DT,renderDataTable)
importFrom(S4Vectors,DataFrame)
importFrom(SingleCellExperiment,isSpike)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SingleCellExperiment,reducedDimNames)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(colourpicker,colourInput)
importFrom(cowplot,get_legend)
importFrom(cowplot,plot_grid)
importFrom(dplyr,arrange)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_blank)
importFrom(ggplot2,geom_path)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_polygon)
importFrom(ggplot2,geom_raster)
importFrom(ggplot2,geom_rect)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_gradientn)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,scale_y_discrete)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,unit)
importFrom(grDevices,col2rgb)
importFrom(grDevices,hcl)
importFrom(grDevices,rgb)
importFrom(graphics,plot)
importFrom(igraph,V)
importFrom(igraph,add_edges)
importFrom(igraph,add_vertices)
importFrom(igraph,adjacent_vertices)
importFrom(igraph,are_adjacent)
importFrom(igraph,degree)
importFrom(igraph,delete.vertices)
importFrom(igraph,incident)
importFrom(igraph,is_dag)
importFrom(igraph,make_graph)
importFrom(igraph,set_vertex_attr)
importFrom(igraph,simplify)
importFrom(igraph,topo_sort)
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,slot)
importFrom(mgcv,in.out)
importFrom(rentrez,entrez_summary)
importFrom(reshape2,melt)
importFrom(rintrojs,introjs)
importFrom(rintrojs,introjsUI)
importFrom(scales,rescale)
importFrom(shiny,HTML)
importFrom(shiny,a)
importFrom(shiny,actionButton)
importFrom(shiny,addResourcePath)
importFrom(shiny,br)
importFrom(shiny,brushOpts)
importFrom(shiny,brushedPoints)
importFrom(shiny,checkboxGroupInput)
importFrom(shiny,checkboxInput)
importFrom(shiny,column)
importFrom(shiny,conditionalPanel)
importFrom(shiny,em)
importFrom(shiny,fluidRow)
importFrom(shiny,hr)
importFrom(shiny,icon)
importFrom(shiny,isolate)
importFrom(shiny,modalDialog)
importFrom(shiny,need)
importFrom(shiny,numericInput)
importFrom(shiny,observe)
importFrom(shiny,observeEvent)
importFrom(shiny,p)
importFrom(shiny,plotOutput)
importFrom(shiny,radioButtons)
importFrom(shiny,reactiveValues)
importFrom(shiny,renderPlot)
importFrom(shiny,renderPrint)
importFrom(shiny,renderUI)
importFrom(shiny,req)
importFrom(shiny,runApp)
importFrom(shiny,selectInput)
importFrom(shiny,selectizeInput)
importFrom(shiny,shinyApp)
importFrom(shiny,showModal)
importFrom(shiny,showNotification)
importFrom(shiny,singleton)
importFrom(shiny,sliderInput)
importFrom(shiny,strong)
importFrom(shiny,tabPanel)
importFrom(shiny,tagList)
importFrom(shiny,tags)
importFrom(shiny,textInput)
importFrom(shiny,uiOutput)
importFrom(shiny,updateRadioButtons)
importFrom(shiny,updateSelectInput)
importFrom(shiny,updateSelectizeInput)
importFrom(shiny,validate)
importFrom(shinyAce,aceEditor)
importFrom(shinydashboard,box)
importFrom(shinydashboard,dashboardBody)
importFrom(shinydashboard,dashboardHeader)
importFrom(shinydashboard,dashboardPage)
importFrom(shinydashboard,dashboardSidebar)
importFrom(shinydashboard,dropdownMenu)
importFrom(shinydashboard,menuItem)
importFrom(shinydashboard,notificationItem)
importFrom(shinydashboard,tabBox)
importFrom(shinydashboard,valueBox)
importFrom(shinydashboard,valueBoxOutput)
importFrom(shinyjs,disable)
importFrom(shinyjs,disabled)
importFrom(shinyjs,enable)
importFrom(shinyjs,useShinyjs)
importFrom(stats,as.dendrogram)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,order.dendrogram)
importFrom(stats,runif)
importFrom(utils,browseURL)
importFrom(utils,citation)
importFrom(utils,head)
importFrom(utils,packageVersion)
importFrom(utils,read.delim)
importFrom(utils,sessionInfo)
importFrom(vipor,offsetX)
importFrom(viridisLite,viridis)
importMethodsFrom(BiocGenerics,ncol)
importMethodsFrom(BiocGenerics,nrow)
importMethodsFrom(SummarizedExperiment,assayNames)
importMethodsFrom(SummarizedExperiment,assays)
