Interactive SummarizedExperiment Explorer

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Documentation for package ‘iSEE’ version 1.0.1

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iSEE-pkg-package iSEE: interactive SummarizedExperiment/SingleCellExperiment Explorer
annotateEnsembl Annotation via ENSEMBL database
annotateEntrez Annotation via Entrez database
assay-method ExperimentColorMap class
assayColorMap ExperimentColorMap class
assayColorMap-method ExperimentColorMap class
assayColorMap<- ExperimentColorMap class
assayColorMap<--method ExperimentColorMap class
assayNames-method ExperimentColorMap class
assayNames<--method ExperimentColorMap class
assays-method ExperimentColorMap class
assays<--method ExperimentColorMap class
class:ExperimentColorMap ExperimentColorMap class
colData-method ExperimentColorMap class
colData<--method ExperimentColorMap class
colDataColorMap ExperimentColorMap class
colDataColorMap-method ExperimentColorMap class
colDataColorMap<- ExperimentColorMap class
colDataColorMap<--method ExperimentColorMap class
colDataPlotDefaults Parameter defaults
defaults Parameter defaults
ExperimentColorMap ExperimentColorMap class
ExperimentColorMap-class ExperimentColorMap class
featAssayPlotDefaults Parameter defaults
heatMapPlotDefaults Parameter defaults
isColorMapCompatible Check compatibility between ExperimentColorMap and SummarizedExperiment objects
iSEE iSEE: interactive SummarizedExperiment/SingleCellExperiment Explorer
iSEE-pkg iSEE: interactive SummarizedExperiment/SingleCellExperiment Explorer
modeGating App pre-configured to link multiple feature assay plots
redDimPlotDefaults Parameter defaults
rowData-method ExperimentColorMap class
rowData<--method ExperimentColorMap class
rowDataColorMap ExperimentColorMap class
rowDataColorMap-method ExperimentColorMap class
rowDataColorMap<- ExperimentColorMap class
rowDataColorMap<--method ExperimentColorMap class
rowDataPlotDefaults Parameter defaults
rowStatTableDefaults Parameter defaults
subsetPointsByGrid Subset points for faster plotting
synchronizeAssays Synchronize assay colormaps to match those in a SummarizedExperiment