809d3806abd3a630405e119fd29d7b47 *DESCRIPTION
fcda84403040fac05428d1906e231d2e *INDEX
28bc82ba34644ada00c199e45c7f0af2 *Meta/Rd.rds
ce514184a3c65a2e53098306c5c0ba15 *Meta/data.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
60771ed7fadec7b9dec206b705284737 *Meta/hsearch.rds
67afb27106f9c63ed56fac563bbde84d *Meta/links.rds
efa4d9ee65f41cb263f45973a6965efb *Meta/nsInfo.rds
13acac1e757bf83520e9f0c5a4db69f8 *Meta/package.rds
9cb1d5568e292f8eb8cca7a3aa51b189 *Meta/vignette.rds
666fdd11f3458d17815e4e8545f961d9 *NAMESPACE
68b329da9893e34099c7d8ad5cb9c940 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/iCNV
99075c8b71a4403d82984f6f14d17e65 *R/iCNV.rdb
e487fceae55737b7df64401ed241c2e0 *R/iCNV.rdx
d118f957b126cae12e7c02d94e484b16 *data/Rdata.rdb
4ec69db858c1e128a7f3c9fd6e1635f5 *data/Rdata.rds
d546363b92cf7d14a966733380c29f85 *data/Rdata.rdx
8f37b0f182ba9b0590028e9d0a1fc3aa *doc/iCNV-vignette.R
6e5fdca93c10ad372b4ba3613fa0d6a7 *doc/iCNV-vignette.Rmd
bf3df8c57f8f3377d2fb20d43ae70190 *doc/iCNV-vignette.html
8bfec149e57e9791f37fc959ab504d7a *doc/index.html
0a0a1ad733f8f9c6b29da2c70858ad73 *extdata/NA06994.csv.arrayicnv
91eb603a625a52a86fad7e6dd010df7c *extdata/NA06994.mapped.ILLUMINA.bwa.CEU.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
c54fa02620ac6298be7e6696463d666b *extdata/NA10847.csv.arrayicnv
8ab2cb927225daca13e1a90cf96f491c *extdata/NA10847.mapped.ILLUMINA.bwa.CEU.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
27a9b50c6940482eb361c57ac6db3e3f *extdata/NA11840.csv.arrayicnv
28ec8043cbff15e51394115d0f1b0c63 *extdata/NA11840.mapped.ILLUMINA.bwa.CEU.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
487cd8ceab74411efe0631e739b364cd *extdata/NA12249.csv.arrayicnv
c0c418a0caf4ec10eb6dff69d0dacfc4 *extdata/NA12249.mapped.ILLUMINA.bwa.CEU.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
7af37b756b236a1a861a258a2d0187b9 *extdata/NA12716.csv.arrayicnv
e199d2b2923e92a945f9d512006c4d93 *extdata/NA12716.mapped.ILLUMINA.bwa.CEU.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
8bc8ab90f7d71c9bca534e0e4c1f4986 *extdata/NA12750.csv.arrayicnv
e8b04542d18826e70111adb0fc51b567 *extdata/NA12750.mapped.ILLUMINA.bwa.CEU.exome.20130415.bam.chr22.sorted.bam.vcf.gz.filter
3e011c79adfa83e8c2a00cf9dba42ccb *extdata/NA12751.csv.arrayicnv
6a0bc6dfe149db3d2781f74f9e934569 *extdata/NA12751.mapped.ILLUMINA.bwa.CEU.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
2aea3934454ab202cfa2b269544ff5bb *extdata/NA12760.csv.arrayicnv
cb3bdb72b27f6f3ace0b3cc8e3a4713b *extdata/NA12760.mapped.ILLUMINA.bwa.CEU.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
34189215121cd8e4f2a330582ca3a88a *extdata/NA12761.csv.arrayicnv
8e80a56703d4c6b62da3b6e7419cc87a *extdata/NA12761.mapped.ILLUMINA.bwa.CEU.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
5578eb73f09af6cbc6b543b4e2eeebe8 *extdata/NA12763.csv.arrayicnv
f415f991e32f9cf003b89eb7315fa600 *extdata/NA12763.mapped.ILLUMINA.bwa.CEU.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
ef64d7dcb6d203d085b50333b6698ecb *extdata/NA18966.csv.arrayicnv
2fcaa5948be84279ce739d27da99d2e4 *extdata/NA18966.mapped.ILLUMINA.bwa.JPT.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
0c2a953dd9349422875f628444eff5a2 *extdata/NA18967.csv.arrayicnv
ec89827cdb8e4af7f552f4769de4663c *extdata/NA18967.mapped.ILLUMINA.bwa.JPT.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
0ab1a79bf998a7feb9cbc7898924cd17 *extdata/NA18968.csv.arrayicnv
32fd3ecc129f371c2a9f79da5b2d6a69 *extdata/NA18968.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
5f7d162f029bda909ce24269f7e2d6e9 *extdata/NA18969.csv.arrayicnv
fd769ebb1ca258b928a2de43e717047e *extdata/NA18969.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
c23353dcb0853084cb8417ba09d5eca6 *extdata/NA18970.csv.arrayicnv
99791fc1eda44af8a899e46d9eb2b93b *extdata/NA18970.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
f454f365ea9673df3ff66dad3916647c *extdata/NA18971.csv.arrayicnv
87236184fd7d920de9d789063388f1f4 *extdata/NA18971.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
667d128e597ffa0caf7d2aa2434d1c5a *extdata/NA18972.csv.arrayicnv
8c7f5c769044aa2439b26d11738946a7 *extdata/NA18972.mapped.ILLUMINA.bwa.JPT.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
582839cb7f7c59cd1b008ec6843307cf *extdata/NA18973.csv.arrayicnv
e24a870465869e9b0e135e383a6e7ee0 *extdata/NA18973.mapped.ILLUMINA.bwa.JPT.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
ea0a91291d7fb18d1e03d182038555cb *extdata/NA18974.csv.arrayicnv
527b3b597517c7c08a8194950ae10a35 *extdata/NA18974.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
4c3437bbf998dffe1ee47e70e3e2200f *extdata/NA18975.csv.arrayicnv
a0f661e49d5acf76281ec7c579aaaa27 *extdata/NA18975.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
61e541017537d46c601de2a92ba7d69b *extdata/NA18976.csv.arrayicnv
3a5ce5a8acff217fc02523f28529e07e *extdata/NA18976.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
e59df68061b25f84d5144f0ae5f66530 *extdata/NA18981.csv.arrayicnv
7293d9c3ac8e54ed9953c2f370359d61 *extdata/NA18981.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
82bd4cd35f3d9efd4687e15318554e5a *extdata/NA18987.csv.arrayicnv
3f73a10e6d6e58cb2e298bf968b377f2 *extdata/NA18987.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
23859ae82a5b9697ca5648d5f8ee8735 *extdata/NA18990.csv.arrayicnv
5c006553e8d92dcf12d878aa430eed57 *extdata/NA18990.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
39488ace2c504e6b02ed7e70f0149648 *extdata/NA18991.csv.arrayicnv
f0ed3ff8aee0074c67157f3f929a6914 *extdata/NA18991.mapped.ILLUMINA.bwa.JPT.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
6d9c1014bf1ec83ae2ad25f7d6a7c8eb *extdata/NA19098.csv.arrayicnv
eb42881b28d1d9b95c529f9eaffbf14e *extdata/NA19098.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
a55983e5287258d5a77c34f2a95cc560 *extdata/NA19119.csv.arrayicnv
5149302a55375ac41f2a0be089c77965 *extdata/NA19119.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
1cc27ca2258830e938f6abd125e38aa7 *extdata/NA19131.csv.arrayicnv
89fbdc88ec08be8cfad6df55466c4d23 *extdata/NA19131.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
60340dde6715b181e0a8cd99ef412b4e *extdata/NA19137.csv.arrayicnv
ce1962e4d22a9635a800267c553cb34e *extdata/NA19137.mapped.ILLUMINA.bwa.YRI.exome.20130415.bam.chr22.sorted.bam.vcf.gz.filter
c7aa55b11b03b3a296997bbf01949db5 *extdata/NA19138.csv.arrayicnv
e79ede7abc2434888399c787930d974d *extdata/NA19138.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
14611ea98b920725a76e2c3f54552ade *extdata/NA19141.csv.arrayicnv
3bdb742a7f4e2d04377ece93999055d6 *extdata/NA19141.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
e427bd051167e272fa8dd034ffe2162c *extdata/NA19143.csv.arrayicnv
141ea2d3b408358905d94e502a4a074b *extdata/NA19143.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
aeb71bf4f5690820f351890ad484b453 *extdata/NA19144.csv.arrayicnv
3f8a1d886f3e47586bb46410c783822c *extdata/NA19144.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
141658f657c968d785fb930097488443 *extdata/NA19152.csv.arrayicnv
02efa134f2145763b0c8e5638e4f4827 *extdata/NA19152.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
21b7c70979722bc9dd9f27db4a191f1f *extdata/NA19153.csv.arrayicnv
a1faeebbe61b573a63bb4f3c6dc4a0b8 *extdata/NA19153.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
1ed6026c469edd98e0e2385e3903bfba *extdata/NA19159.csv.arrayicnv
6a927a8cfa3fadad913ae2fa27a0eafc *extdata/NA19159.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
b423d6a0f908c47b949b6ffdba694c5c *extdata/NA19160.csv.arrayicnv
a04a9f35e77cd6372d05b245b3bef7aa *extdata/NA19160.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
a8bfdfde1ecc3bb2d5265ffb74a00787 *extdata/NA19171.csv.arrayicnv
fbdc410473c84c206d2611d073b24b3a *extdata/NA19171.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
03ae2c44ea9113327740e6f6e40ee370 *extdata/NA19200.csv.arrayicnv
b7fa742887840083396f6a2dd43a2410 *extdata/NA19200.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
36bed17d0605495b2ab7c63da7be04d4 *extdata/NA19201.csv.arrayicnv
ad5310b30a9773dd0c5bc4d9078f5ed3 *extdata/NA19201.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
424a99fa60c5c47c8ff464a81bb104f0 *extdata/NA19204.csv.arrayicnv
720110fe363f8837a9d75d13e8e62d24 *extdata/NA19204.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
fe2e662d0d5144dbcef58edfe0606356 *extdata/NA19206.csv.arrayicnv
36459f5783fc30f385117d9900b69835 *extdata/NA19206.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
154a3c2e3d56b0a6e5e3c1a5f966d171 *extdata/NA19207.csv.arrayicnv
6629682ecfb08921b53a729d011bed3e *extdata/NA19207.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
ca2d0884b0e5c3ec4e73c1b1e21b75f1 *extdata/NA19209.csv.arrayicnv
4a5d9ba7eb675ba298431b1505a3915d *extdata/NA19209.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
202e481d9af840090d84ef99f9d31742 *extdata/NA19210.csv.arrayicnv
af982cdc97864a6c5aa19f1acfb8c4e5 *extdata/NA19210.mapped.ILLUMINA.bwa.YRI.exome.20121211.bam.chr22.sorted.bam.vcf.gz.filter
db731c3919a7370334a472e5fd00754e *extdata/NA19223.csv.arrayicnv
498a2e1d5f70033559d6da4044bb14b0 *extdata/NA19223.mapped.ILLUMINA.bwa.YRI.exome.20120522.bam.chr22.sorted.bam.vcf.gz.filter
df2f0b26eb0a28a4cbbd76a69dfc0b98 *extdata/bam_vcf.list
04c18d556aa6e49d9ce1d7ee8d3df73d *help/AnIndex
6b617e08fa4169a458d85f8903ae84f4 *help/aliases.rds
b2cd266408e6f16c2318e764df536f7e *help/iCNV.rdb
90114ee36d130325fc55401d40c15a3a *help/iCNV.rdx
3638b0300af89c984944938635431e74 *help/paths.rds
a18e2250be33004e46925b9b1af82e06 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
e321edcfbdbd6411ce9d99d323d81d54 *html/bambaf_from_vcf.html
ec8b13a98751dc319a8e6db476b26aa9 *html/bed_generator.html
22bfba29feccdb78d7c49965cd33d948 *html/chr.html
55d586c7f8890142d07bfec83c06a52b *html/filenm.html
28e911633320d95efb0fc3b5ed87e37f *html/get_array_input.html
c94cb6c1b52788f0e6af6adc98929297 *html/iCNV_detection.html
86c81ab630c1d7f0db09070fc7c5c7b4 *html/icnv_output_to_gb.html
08e0a6721b0671f993dfa3d742577899 *html/icnv_res0.html
78dd5263ef1a2e0f8ba91d75088f5b36 *html/ngs_baf.chr.html
3e45ee4c1a69f8d4fde4d3e0c9a63c6b *html/ngs_baf.html
73eb03bb968f6b10cce4fb7589eebdae *html/ngs_baf.id.html
712596680b7cec804d07550807dfc393 *html/ngs_baf.nm.html
e58d3aaa908751645ffaa5fba36f7506 *html/ngs_baf.pos.html
a03da47b444a553f330f39de067888a7 *html/ngs_plr.html
ee43167a23d5ce90ef6a28824b145277 *html/ngs_plr.pos.html
a6c57f032a3d73cf0bf2c981f7032d9a *html/normObj.html
ea4395f8348a502afe826b8993086ba5 *html/output_list.html
1c6ac53b1e43847c8d6f5c734bcf1bbb *html/plotHMMscore.html
8b299810cb4e3e9b9c338eb29901de36 *html/plot_intensity.html
07cc4494a313dff79076a511f4f91a09 *html/plotindi.html
dc72ed7f07dbe1242ac45a5f4f9aa897 *html/projname.html
c05f1a40651c92247d428f112a58688e *html/qcObj.html
e6a067299161c92c05d0784686553368 *html/sampname.html
37fb7d9962e337829dcaf767ab96dc77 *html/sampname_qc.html
dda1300a52c6b96d263b00153291c28b *html/snp_baf.html
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