getNormBeta {funtooNorm}R Documentation

Computes Beta values from normalized signals

Description

Computes Beta values from normalized signals

Usage

getNormBeta(object, offset = 100)

## S4 method for signature 'SampleSet'
getNormBeta(object, offset = 100)

Arguments

object

of type SampleSet

offset

default is 100 as Illumina standard

Value

a matrix containing beta after normalization value for each CpG position and each samples

Methods (by class)

Examples

require(minfiData)
pData(RGsetEx)$cell_type <- rep(c("type1","type2"),3)
mySampleSet=fromRGChannelSet(RGsetEx)
b=getNormBeta(funtooNorm(mySampleSet))
[Package funtooNorm version 1.4.0 Index]