Method to generate an ExpressionSet of informative genes

Description

This function generates an instance of exprSet-class, that contains only informative probe sets.

Usage

## S4 method for signature 'INI_Calls'
getI_Eset(object)

Arguments

Value

exprSet-class

Methods

signature(object = "INI_Calls")

An instance of INI_Calls-class.

See Also

expFarms, qFarms,lFarms,INIcalls,summary

Examples

data(testAffyBatch)
eset <- expFarms(testAffyBatch, bgcorrect.method = "none", pmcorrect.method = "pmonly", normalize.method = "constant") 
INIs <- INIcalls(eset)  # apply I/NI calls
summary(INIs)
plot(INIs) # draws a density plot of I/NI-calls
I_data <- getI_Eset(INIs) # affybatch containing only informative probe sets
NI_data <- getNI_Eset(INIs) # affybatch containing only non-informative probe sets
I_probes <- getI_ProbeSets(INIs) # vector containing only informative probe sets names
NI_probes <- getNI_ProbeSets(INIs) # vector containing only  non-informative probe sets names