ISA transcription modules for the ALL data

Description

The Iterative Signature Algorithm (ISA) is a biclustering method. ALLModules and ALLModulesSmall are example ISA biclusters (=modules) found in the ALL data set.

Usage

ALLModules
ALLModulesSmall

Format

Both ALLModules and ALLModulesSmall are instances of the ISAModules class.

Source

ISAModules was generated by calling ISA on the ALL data set, using the default parameters. ISAModulesSmall was generated the same way, but with gene threshold 2.7 and condition threshold 1.4 only.

References

Bergmann S, Ihmels J, Barkai N: Iterative signature algorithm for the analysis of large-scale gene expression data Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Mar;67(3 Pt 1):031902. Epub 2003 Mar 11.

See Also

The ALL BioConductor package.

Examples

data(ALLModules)
ALLModules