| loops-class {diffloop} | R Documentation |
A class to represent ChIA-PET interaction data and annotations
anchorsA GRanges object describing loop anchor locations
interactionsA matrix. Each row is an interaction between two anchors
countsA matrix with the number paired-end reads per loop per sample
colDataA data.frame with features (colums) for each sample (rows)
rowDataA data.frame with features (columns) for each loop (rows)