97d1cb27e8478d7ae4de59a2de8c86e7 *CITATION
d4c6e343c0be08426f0dea80dfde42db *DESCRIPTION
82aad66b16517c9991aa8cae64982337 *INDEX
f0d521a29e7ade02216bc819cb35da28 *Meta/Rd.rds
e5110eb845dbd251eaf9781c2ba6dcf5 *Meta/data.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
55b8667f20133f967cf2d6f3165a5b52 *Meta/hsearch.rds
07db94f51eac72ecf9e0647cd7be8e77 *Meta/links.rds
0f30ace714ec9c0fbf5af42c18383d29 *Meta/nsInfo.rds
0f63476f6bd93342a9a2076e80523a9a *Meta/package.rds
b96861ee93706b4a40f70c0968b5a494 *Meta/vignette.rds
e096c80e50b90520bbd9b8ac19805a4c *NAMESPACE
8ada7993428fbe4013f2164a0f29f319 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/deepSNV
ed172e9a2471849964ea330fcb92eedf *R/deepSNV.rdb
c8598ff9ec8c4321017456059fde5872 *R/deepSNV.rdx
eb93e43e868cf6b00523766e2093961c *TODO
3ccecc236923abcec5bf3979f95058ec *data/HIVmix.RData
e5e59d311d41716d436bda6c12d6b6f8 *data/RCC.RData
44fe941582b98ed2fb74a2ff43bd04dc *data/counts.RData
8f473e99da6aea7893fbf4f0967161a5 *data/phiX.RData
39946182d2a7087db51be00e27bfe68e *data/pi.RData
a198b59b439c25594d85e0f8c8afc300 *data/trueSNVs.RData
b668e30fc1bc1b8c1f60ad1dbaff8772 *doc/deepSNV.R
79ea907278cca8011a87b7954bfc02ce *doc/deepSNV.Rnw
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db14767c6110ae0364ac7e64e94d5518 *doc/index.html
92e9aece07ac3612437ffc3be5c5823f *doc/shearwater.R
fc4e56aed626edbec5e35a7c0ac725b0 *doc/shearwater.Rnw
0338e2940e1aa7945a1116fa56b1e855 *doc/shearwater.pdf
05a586a89e9f687393bba927604f57c0 *doc/shearwaterML.R
866271256074ead132c1e1225b663bac *doc/shearwaterML.Rmd
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03adcf464008b8e2642cdb62807764d3 *example/deepSNV-example.R
f3dd841413d42161102b4b371b8b8e8f *example/shearwater-example.R
62e3352bca95588f9d1478ae36f1ed83 *extdata/control.bam
a3507164d703e922651e0e56236bc293 *extdata/control.bam.bai
1adb135cff9805675264cb6798c010c4 *extdata/deepSNV.vcf
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e3ab133fb517749b4b6fe971c84942cc *extdata/shearwater2.vcf
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6af3a3077f6d4ab936e1bb777ad8e910 *extdata/test.bam
74ceb014e38fe7f5111bc9d501889a5e *extdata/test.bam.bai
2df1a587bda6e4c60cc283dfd468cbaa *help/AnIndex
4979874ad0677cd57cfbf6d66e10d3cb *help/aliases.rds
8c1254480493d3c0777957832abbb4dd *help/deepSNV.rdb
5774df65e9e390e8db78f2d3f492debe *help/deepSNV.rdx
623ea5dc60df27966279948632169c59 *help/paths.rds
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70e63c4ce40daf2028cf0439c12157ae *html/Extract-methods.html
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b22ad4cb09fa31c01716f3e7a63e5c9c *html/bf2Vcf.html
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62bb84c3bdb8ab62928081ee3db1e5fd *html/counts.html
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30b05ac935fdd653990ddca8c0516a44 *html/estimateDirichlet-methods.html
56bb6ac1345a014d01c6194c2657e7cb *html/estimateDispersion-methods.html
190e772d95d59745740db0ebf116b707 *html/estimateRho.html
bb2c0f9654165b9a80a93fb3082df78e *html/loadAllData.html
21c5957269bc749ba06e3420963574b7 *html/makePrior.html
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b3d633709106d5c1a0eb2b5ebe8020bf *html/mcChunk.html
09cfa3d0dcccbd03f8d47cd1cd0c94f9 *html/normalize-methods.html
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74432f093354c2f152aae04ff0bae489 *html/phiX.html
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25e968adc093d0e3c7a989202e0adb85 *html/plot.deepSNV.html
501fb0158e63a034c944780b0f92cbd7 *html/qvals2Vcf.html
851c7df4b28c63d2dddded1c4a6e7d57 *html/repeatMask-methods.html
1e749498e5ed4321386da8f92afea4e2 *html/shearwater.html
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1722a836b061dd7f6c99bb9189ca6a86 *html/summary-methods.html
ce41d018c6140ce8099123242e1d67fd *html/test-methods.html
0385763a0c2542d81fc5e4a33fc05c22 *html/trueSNVs.html
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a5c3f70f5ae704b3c231bf0aee11840a *libs/x64/deepSNV.dll
