prepareProteome {dagLogo}R Documentation

prepare proteome for background building

Description

prepare proteome from UniProt webserver or a fasta file

Usage

prepareProteome(UniProt.ws, fasta, species="unknown")

Arguments

UniProt.ws

an object of UniProt.ws

fasta

fasta file name or an object of AAStringSet

species

an character to assign the species of the proteome

Value

an object of Proteome which contain protein sequence information

Author(s)

Jianhong Ou

See Also

formatSequence, buildBackgroundModel

Examples

    if(interactive()){
        library(UniProt.ws)
        UniProt.ws <- UniProt.ws(taxId=7227)
        proteome <- prepareProteome(UniProt.ws, species="Drosophila melanogaster")
    }
[Package dagLogo version 1.18.0 Index]