Class "dagPeptides"

Description

An object of class "dagPeptides" represents the information of peptides.

Objects from the Class

Objects can be created by calls of the form new("dagPeptides", data, peptides, upstreamOffset, downstreamOffset, type).

Slots

data

Object of class "data.frame" The details of the input sequences. It includes the columns: IDs, anchorAA (anchor Amino Acid), anchorPos (anchor Position), peptide (protein peptide), anchor, upstream, downstream (peptides in given upstream and downstream offset from anchor)

peptides

code"matrix" The input peptides. Each column contains one peptide in that position

upstreamOffset

"numeric" The upstream offset from anchor

downstreamOffset

"numeric" The downstream offset from anchor

type

"charactger" ID type of inputs