plot_bipartite {dSimer} | R Documentation

## plot disease-gene (or GO term etc.) associations as a bipartite graph

### Description

plot a bipartite graph which visualizes associations between diseases and genes (or GO terms etc.)

### Usage

    plot_bipartite(xylist, vertex.size = 12, vertex.shape1 = "circle",
      vertex.shape2 = "square", vertex.color1 = "darkseagreen",
      vertex.color2 = "turquoise1", vertex.label.font = 2,
      vertex.label.dist = 0, vertex.label.color = "black",
      vertex.label.cex = 0.8, edge.color = "black",
      layout = layout.kamada.kawai)

### Arguments

`xylist` | a named list object which names are diseases and each element of the list is a gene set with respect to each disease.
`vertex.size` | vertex size
`vertex.shape1` | shape for one kind of vertex
`vertex.shape2` | shape for another kind of vertex
`vertex.color1` | color for one kind of vertex
`vertex.color2` | color for another kind of vertex
`vertex.label.font` | label text font
`vertex.label.dist` | label text dist
`vertex.label.color` | label text color
`vertex.label.cex` | label text cex
`edge.color` | edge color
`layout` | layout

### Value

an igraph plot object

### Author(s)

Peng Ni, Min Li

### Examples

    data(d2g_fundo_symbol)
    d2g_sample<-sample(d2g_fundo_symbol, 3)
    plot_bipartite(d2g_sample)

[Package dSimer version 1.6.0 Index]