R: Contribute results of meta-analysis to public database.

contribute {crossmeta}

R Documentation

Contribute results of meta-analysis to public database.

Description

Contributed results will be used to build a freely searchable database of gene expression meta-analyses.

Usage

contribute(diff_exprs, subject)

Arguments

`diff_exprs`	Result of call to `diff_expr`.
`subject`	String identifying meta-analysis subject (e.g. "rapamycin" or "prostate_cancer").

Details

Performs meta-analysis on diff_exprs using es_meta. Sends overall mean effect size values and minimal information needed to reproduce meta-analysis.

Value

NULL (used to contribute meta-analysis).

Examples

library(lydata)

# location of data
data_dir <- system.file("extdata", package = "lydata")

# gather GSE names
gse_names  <- c("GSE9601", "GSE15069", "GSE50841", "GSE34817", "GSE29689")

# load differential expression analyses
anals <- load_diff(gse_names, data_dir)

# contribute results of meta-analysis
# contribute(anals, subject = "LY294002")

[Package crossmeta version 1.6.0 Index]