| glossiMarginal {cpvSNP} | R Documentation |
A helper function to calculate the chi-squared statistic corresponding to an observed set of p-values.
glossiMarginal(pval, set)
pval |
A vector of p-values of length equal to the number
of geneIds in the |
set |
An element of a |
This function calculates a chi-squared statistic from a set of pvalues.
An object of type GLOSSIResult.
Jason Hackney, Jessica Larson
set.seed(30)
pvals <- runif(100)
names(pvals) <- paste0("rs", 1:100)
snpGS5 <- GeneSet(geneIds=names(pvals)[1:5], setName="set5")
res <- glossiMarginal (pvals, snpGS5)