sequences {cobindR}R Documentation

sequences of cobindr object

Description

sequences of cobindr object.

Usage

## S4 method for signature 'cobindr'
sequences(x) 
## S4 replacement method for signature 'cobindr,list'
sequences(x) <- value

Arguments

x

a cobindr object

value

the list of input sequences of type SeqObj

Value

sequences (character)

Author(s)

Rob Lehmann <r.lehmann@biologie.hu-berlin.de>

See Also

uid,name,sequences,bg_sequences,desc,configuration,binding_sites,bg_binding_sites,pfm,pairs,bg_pairs,pairs_of_interest

Examples


cfg <- cobindRConfiguration()
sequence_type(cfg) <- 'fasta'
sequence_source(cfg) <- system.file('extdata/sox_oct_example_vignette_seqs.fasta',package='cobindR')
sequence_origin(cfg) <- 'Mouse Embryonic Stem Cell Example ChIP-Seq Oct4 Peak Sequences'
cbr <- cobindr(cfg)
length(sequences(cbr))
[Package cobindR version 1.18.0 Index]