pairs {cobindR}R Documentation

motif hit pairs in the foreground sequences

Description

motif hit pairs in the foreground sequences

Usage

## S4 method for signature 'configuration'
pairs(x)
## S4 replacement method for signature 'configuration,character'
pairs(x) <- value
## S4 method for signature 'cobindr'
pairs(x)
## S4 replacement method for signature 'cobindr,data.frame'
pairs(x) <- value

Arguments

x

a cobindR configuration object

value

for a configuration object, pairs is a character specifying the motif pairs which should be considered. for a cobindR object, pairs is a data.frame holding the detected motif pairs.

Value

pairs (character)

Author(s)

Rob Lehmann <r.lehmann@biologie.hu-berlin.de>

See Also

id,experiment_description,sequence_source,sequence_origin,sequence_type,bg_sequence_source,bg_sequence_origin,bg_sequence_type,species,downstream,upstream,max_distance,pairs,pfm_path,threshold,fdrThreshold,path,mart,pValue

Examples

cfg <- cobindRConfiguration()
pairs(cfg)
[Package cobindR version 1.18.0 Index]