Package: clusterExperiment
Title: Compare Clusterings for Single-Cell Sequencing
Version: 2.0.2
Description: Provides functionality for running and comparing many
    different clusterings of single-cell sequencing data or other large mRNA Expression data sets.
Authors@R: c(person("Elizabeth", "Purdom", email = "epurdom@stat.berkeley.edu",
            role = c("aut", "cre", "cph")),
	     person("Davide","Risso", role = "aut",email = "risso.davide@gmail.com"),
	     person("Marla", "Johnson", role = "ctb"))
Author: Elizabeth Purdom [aut, cre, cph], Davide Risso [aut], Marla Johnson [ctb]
Maintainer: Elizabeth Purdom <epurdom@stat.berkeley.edu>
BugReports: https://github.com/epurdom/clusterExperiment/issues
License: Artistic-2.0
Depends: R (>= 3.4.2), SingleCellExperiment, SummarizedExperiment
Imports: methods, NMF, RColorBrewer, ape (>= 5.0), phylobase, cluster,
        stats, limma, dendextend, howmany, locfdr, matrixStats,
        graphics, parallel, RSpectra, kernlab, stringr, S4Vectors,
        grDevices, Rcpp, HDF5Array (>= 1.7.10), DelayedArray (>=
        0.5.31)
Suggests: BiocStyle, knitr, testthat, scRNAseq, MAST, Rtsne
VignetteBuilder: knitr
LazyData: false
LazyLoad: false
RoxygenNote: 6.0.1
biocViews: Clustering, RNASeq, Sequencing, Software, SingleCell
Collate: 'AllChecks.R' 'AllClasses.R' 'AllGenerics.R' 'AllHelper.R'
        'AllHelperClusterFunction.R' 'AllHelperFilter.R'
        'JiashinJiCode.R' 'RcppExports.R' 'addClusters.R'
        'internalClusterFunctions.R' 'internalFunctions.R'
        'builtInClusterFunctions.R' 'clusterContrasts.R'
        'clusterLabels.R' 'clusterMany.R' 'clusterSingle.R'
        'combineMany.R' 'dataCreation.R' 'getFeatures.R' 'getParams.R'
        'mainClustering.R' 'makeBlankData.R' 'makeDendrogram.R'
        'makeFilterStats.R' 'makeReducedDims.R' 'mergeClusters.R'
        'plotBarplot.R' 'plotClusters.R' 'plotClustersWorkflow.R'
        'plotContrastHeatmap.R' 'plotDendrogram.R'
        'plotFeatureBoxplot.R' 'plotHeatmap.R' 'plotReduceDim.R'
        'plottingHelpers.R' 'rsec.R' 'seqCluster.R'
        'subsampleClustering.R' 'subsampleLoop.R' 'transformFunction.R'
        'workflowClusters.R'
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2018-05-18 03:27:28 UTC; biocbuild
Built: R 3.5.0; i386-w64-mingw32; 2018-05-18 11:42:06 UTC; windows
Archs: i386, x64
