newfSet {chimera} | R Documentation

## A constructor for fSet class objects

### Description

A function to create a new fSet object

### Usage

    newfSet(fusionInfo = list(fusionTool = NA,
                                          UniqueCuttingPositionCount = 0,
                                          SeedCount = 0,
                                          RescuedCount = 0,
                                          SplicePattern = NA,
                                          FusionGene = NA,
                                          frameShift = NA),
    	           fusionLoc = GRangesList(),
                   fusionRNA = DNAStringSet(),
                   fusionGA = GAlignments())

### Arguments

`fusionInfo` | A list of the fusion characteristics see fSet class slot fusionInfo
`fusionLoc` | A GRangesList encompassing the fusion break points
`fusionRNA` | A DNAStringSet encompassing the fusion transcript
`fusionGA` | A GAlignments encompassing the location of reads mapping on the fusion transcript

### Value

An object of fSet class

### Author(s)

Raffaele A Calogero

### Examples

    tmp <- newfSet()
    tmp

[Package chimera version 1.22.0 Index]