filterSamReads {chimera} | R Documentation

## A function to filter SAM or BAM files

### Description

A function to filter SAM or BAM files using picard-tools

### Usage

    filterSamReads(input, output, filter=c("includeAligned","excludeAligned"))

### Arguments

`input` | SAM/BAM file to be validated
`output` | file name in which to save the filtered reselts
`filter` | type of filter

### Value

A filtered SAM/BAM.

### Author(s)

Raffaele A Calogero

### See Also

`picardInstallation`

### Examples

    #	filterSamReads(input="kd2_accepted_hits2.sam", output="kd2_accepted_hits2_mapped.sam", filter="includeAligned")

[Package chimera version 1.22.0 Index]