initiate_canonical_databases {Uniquorn}R Documentation

initiate_canonical_databases

Description

Parses data into r list variable

Usage

initiate_canonical_databases(
    cosmic_file = "CosmicCLP_MutantExport.tsv",
    ccle_file = "CCLE_hybrid_capture1650_hg19_NoCommonSNPs_CDS_2012.05.07.maf",
    ref_gen = "GRCH37"
)

Arguments

cosmic_file

The path to the cosmic DNA genotype data file. Ensure that the right reference genome is used

ccle_file

The path to the ccle DNA genotype data file. Ensure that the right reference genome is used

ref_gen

Reference genome version

Value

Returns message if parsing process has succeeded

Examples

initiate_canonical_databases(
    cosmic_file = "CosmicCLP_MutantExport.tsv",
    ccle_file = "CCLE_hybrid_capture1650_hg19_NoCommonSNPs_CDS_2012.05.07.maf",
    ref_gen = "GRCH37"
)
[Package Uniquorn version 2.0.0 Index]