Package: ToPASeq
Version: 1.14.1
Date: 2018-06-19
Title: Topology-based pathway analysis of RNA-seq data
Author: Ivana Ihnatova, Eva Budinska, Ludwig Geistlinger
Maintainer: Ludwig Geistlinger <ludwig.geistlinger@sph.cuny.edu>
Description: Implementation of methods for topology-based pathway analysis of 
    RNA-seq data. This includes Topological Analysis of Pathway Phenotype 
    Association (TAPPA; Gao and Wang, 2007), PathWay Enrichment Analysis (PWEA; 
    Hung et al., 2010), and the Pathway Regulation Score (PRS; Ibrahim et al., 
    2012).
Depends: R(>= 3.5.0), graphite
Imports: Rcpp, graph, methods
Suggests: BiocStyle, EnrichmentBrowser, airway, knitr, rmarkdown
LinkingTo: Rcpp
LazyData: yes
License: AGPL-3
biocViews: GeneExpression, RNASeq, DifferentialExpression,
        GraphAndNetwork, Pathways, NetworkEnrichment, Visualization
VignetteBuilder: knitr
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/ToPASeq
git_branch: RELEASE_3_7
git_last_commit: bd4f779
git_last_commit_date: 2018-06-19
Date/Publication: 2018-06-19
NeedsCompilation: yes
Packaged: 2018-06-20 02:20:40 UTC; biocbuild
Built: R 3.5.0; i386-w64-mingw32; 2018-06-20 11:18:36 UTC; windows
Archs: i386, x64
