a42b3b1db026c330b7a1a162ebc42e6c *DESCRIPTION
27b80f7f7185212dc706b536da0f13b5 *INDEX
2a5a0a31ea8b78aadfc0cae0d962c888 *Meta/Rd.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
982b5fe3647a9919b6c0c63a1d856d59 *Meta/hsearch.rds
0132ecb4c67d44bc7535dab66a1265c5 *Meta/links.rds
ae31bb715c203c350bbd4f6989e0d737 *Meta/nsInfo.rds
c24c9658f5c65c3c5892de1682bd08e8 *Meta/package.rds
f5dd3a5170054cedf0d17225ff9a27e6 *Meta/vignette.rds
474665508d004935c389e126b5352321 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/SplicingGraphs
08b11be78d890ee9163b1209d543b960 *R/SplicingGraphs.rdb
118c4f4c3db5a5ada4a3203da8e4b725 *R/SplicingGraphs.rdx
e11b94ee61a41bbb90796fc17f72cd67 *doc/SplicingGraphs.R
3928e8690e8009e82a5ea2d1ec1ace00 *doc/SplicingGraphs.Rnw
19cb37ae174b66e38c0c772bfb0cb950 *doc/SplicingGraphs.pdf
88377b5fd65dbaaf32cf912ac99e20ac *doc/index.html
e927d6e86c26ef2f567f538e4d02c6bb *extdata/ASpatterns.txt
b10a130d5d8e8aa34a67c0676e678e42 *extdata/TSPCsg.rda
2496dff4893d460511d871a0c485aa6b *extdata/toy_genes.gff3
648ca39416010bda3340da48c26912ef *extdata/toy_overlaps.txt
d3b7b2533bb4e97a3f1be7bf70f4b588 *extdata/toy_reads.sam
ff355f3e1adcaa01590064536ff5380f *help/AnIndex
998ef42ca4635018b43b9e2deb9e16c9 *help/SplicingGraphs.rdb
498ca134efd63a66b2410814b0d8f56f *help/SplicingGraphs.rdx
ec69b534783689d81dd4c0add8f770f4 *help/aliases.rds
d70f1b6d7f13437f582e479570589a47 *help/paths.rds
54a6b5deeb989673df02ace892f481a6 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
7c6142387f15e2acd43f294e51f8ab96 *html/SplicingGraphs-class.html
57fde6cbcf388c95c653f6cd358d148f *html/SplicingGraphs-package.html
751cca8d4fc3fd107363815b552413b5 *html/TSPCsg.html
c8ee3cb0879b2eb9b927e75cb6e5de93 *html/assignReads.html
022c2f093a57b8137fccf54592a8bb9e *html/bubbles-methods.html
fba426522b87abcd067ec3641b38ea89 *html/countReads-methods.html
db9fe6a2b4fa847cdb8f3c89fa54273b *html/plotTranscripts-methods.html
bb9164beebf7f3e319c38f1edd7f6361 *html/rsgedgesByGene-methods.html
43e58c3805a4836eff2e1361f04c0d04 *html/sgedges-methods.html
3ca1e46c4966a7d8f39acb5e75b026e6 *html/sgedgesByGene-methods.html
4210d63f4ea4da1f979809fd84bbf366 *html/sgraph-methods.html
6f846b5a83b40133277f6aca7a59ef67 *html/toy_data.html
9c21ced5e0f0cc0c0a1a714b2c12d178 *html/txpath-methods.html
f22485f979fcbadb1e6d5c1498f2de11 *scripts/TSPC-utils.R
0ee9097358b000f70562de18bc67a066 *scripts/create-vignette-plots.R
44830c9a0141fe8277304d7419d7a20d *scripts/makeTSPCsg.R
1bba688669d20686db16f84dc56a8e2f *unitTests/test_countReads-methods.R
