# Generated by roxygen2: do not edit by hand

export(as.alpha)
export(as.alpha.in.range)
export(as.beta)
export(as.beta.in.range)
export(as.loglik.progression)
export(as.loglik.progression.in.range)
export(as.mean.squared.error)
export(as.starting.beta)
export(as.starting.beta.in.range)
export(evaluate.lambda.range)
export(import.counts.data)
export(nmf.LassoCV)
export(nmf.LassoK)
export(patient.plot)
export(signatures.plot)
export(starting.betas.estimation)
import(BSgenome.Hsapiens.1000genomes.hs37d5)
import(GenomeInfoDb)
import(GenomicRanges)
import(IRanges)
import(NMF)
import(ggplot2)
import(gridExtra)
import(nnlasso)
import(nnls)
import(parallel)
importFrom(BSgenome,getSeq)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,complement)
importFrom(Biostrings,reverseComplement)
importFrom(Biostrings,subseq)
importFrom(NMF,basis)
importFrom(NMF,nmf)
importFrom(data.table,":=")
importFrom(data.table,.N)
importFrom(data.table,as.data.table)
importFrom(data.table,data.table)
importFrom(data.table,dcast)
importFrom(data.table,fread)
importFrom(data.table,melt)
