GetKnnDe {Sconify} | R Documentation

## Get the KNN density estimaion

### Description

Obtain a density estimation derived from the original manifold, avoiding the lossiness of lower dimensional embeddings

### Usage

    GetKnnDe(nn.matrix)

### Arguments

`nn.matrix` | A list of 2, where the first is a matrix of nn indices, and the second is a matrix of nn distances

### Value

a vector where each element is the KNN-DE for that given cell, ordered by row number, in the original input matrix of cells x features

### Examples

    ex.knn <- Fnn(wand.combined, input.markers, k = 30)
    GetKnnDe(ex.knn)

[Package Sconify version 1.0.4 Index]