GetMarkerNames {Sconify} | R Documentation

## Takes in an example file as input and returns all marker names

### Description

This is a quick way to get a list of preferred marker names. This outputs a csv file containing all markers in the dataset in the name format that will be recognized by downstream functions. You manually alter this list to remove and/or categorize the said markers. The file can then be read in (stringsAsFactors = FALSE) to give you the marker list of interest. In particular, name the top of the column as "markers" if you're just altering the list. If you're doing to divide it into static and functional markers, produce two columns, naming them respectively.

### Usage

    GetMarkerNames(file)

### Arguments

`file` | the fcs file of interest

### Value

the list of markers of interest. This is to be written as a csv

### Examples

    file <- system.file("extdata", "Bendall_et_al_Cell_Sample_C_basal.fcs",
        package = "Sconify")
    GetMarkerNames(file)

[Package Sconify version 1.0.4 Index]