# STRINGdb (Search Tool for the Retrieval of Interacting proteins database)

## Documentation for package ‘STRINGdb’ version 1.20.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

coeffOfvar | coeffOfvar
delColDf | delColDf
diff_exp_example1 | example of microarray data (data processed from GEO GSE9008)
downloadAbsentFile | downloadAbsentFile
downloadAbsentFileSTRING | downloadAbsentFileSTRING
get_STRING_species | get_STRING_species
interactions_example | example of a protein-protein interactions sorted data frame
multi_map_df | multi_map_df
plot_ppi_enrichment_graph | plot_ppi_enrichment_graph
ppie.compLambda | ppie.compLambda
ppie.compLambdaL1L2 | ppie.compLambdaL1L2
ppie.compPij | ppie.compPij
ppie.getNumEdgesBetween | ppie.getNumEdgesBetween
ppi_enrichment | ppi_enrichment
ppi_enrichment_full | ppi_enrichment_full
renameColDf | renameColDf
STRINGdb | Class '"STRINGdb"'
STRINGdb-class | Class '"STRINGdb"'
\S4method{add_diff_exp_color}{STRINGdb} | add_diff_exp_color
\S4method{add_proteins_description}{STRINGdb} | add_proteins_description
\S4method{benchmark_ppi_pathway_view}{STRINGdb} | benchmark_ppi_pathway_view
\S4method{benchmark_ppi}{STRINGdb} | benchmark_ppi
\S4method{get_aliases}{STRINGdb} | get_aliases
\S4method{get_annotations_desc}{STRINGdb} | get_annotations_desc
\S4method{get_annotations}{STRINGdb} | get_annotations
\S4method{get_bioc_graph}{STRINGdb} | get_bioc_graph
\S4method{get_clusters}{STRINGdb} | get_clusters
\S4method{get_enrichment}{STRINGdb} | get_enrichment
\S4method{get_graph}{STRINGdb} | get_graph
\S4method{get_homologs_besthits}{STRINGdb} | get_homologs_besthits
\S4method{get_homologs}{STRINGdb} | get_homologs
\S4method{get_interactions}{STRINGdb} | get_interactions
\S4method{get_link}{STRINGdb} | get_link
\S4method{get_neighbors}{STRINGdb} | get_neighbors
\S4method{get_png}{STRINGdb} | get_png
\S4method{get_ppi_enrichment_full}{STRINGdb} | get_ppi_enrichment_full
\S4method{get_ppi_enrichment}{STRINGdb} | get_ppi_enrichment
\S4method{get_proteins}{STRINGdb} | get_proteins
\S4method{get_pubmed_interaction}{STRINGdb} | get_pubmed_interaction
\S4method{get_pubmed}{STRINGdb} | get_pubmed
\S4method{get_subnetwork}{STRINGdb} | get_subnetwork
\S4method{get_summary}{STRINGdb} | get_summary
\S4method{get_term_proteins}{STRINGdb} | get_term_proteins
\S4method{load_all}{STRINGdb} | load_all
\S4method{load}{STRINGdb} | load
\S4method{map}{STRINGdb} | map
\S4method{mp}{STRINGdb} | mp
\S4method{plot_network}{STRINGdb} | plot_network
\S4method{plot_ppi_enrichment}{STRINGdb} | plot_ppi_enrichment
\S4method{post_payload}{STRINGdb} | post_payload
\S4method{remove_homologous_interactions}{STRINGdb} | remove_homologous_interactions
\S4method{set_background}{STRINGdb} | set_background