c3bde156c0761d9578badd79a0161031 *CITATION
6d5b5be17bb691cd851b97b32c41f822 *DESCRIPTION
79c58e2ad89d35e1a68916a9d5ba0b79 *INDEX
0a583444236fde21d06294c3432e102c *Meta/Rd.rds
bfc18fe4dca956154e1faa3224bf8204 *Meta/data.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
99cba9e1d9b48d2f24887b5c5b459096 *Meta/hsearch.rds
10ed4ac140424c537829ff655d00090e *Meta/links.rds
18b29286485ce35e9b2e26f523880180 *Meta/nsInfo.rds
eca9a3f41d90db1695a49760af53f234 *Meta/package.rds
6b25ed1949c5cc9481c243873b1c98f1 *Meta/vignette.rds
8ec02bf68dd22ce6d53fb4e6e427a77f *NAMESPACE
a0fddb94813c5ed2c6f607d24b436efd *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/SGSeq
51715f7a0647534e931b98af42e9b600 *R/SGSeq.rdb
6b2de524c8995aeacf13c8e9acbb16e0 *R/SGSeq.rdx
308afffda2dd5906cdbfb620f33f835e *data/Rdata.rdb
4da1cdc046a65f9a93322c33bb00739f *data/Rdata.rds
87919fffda3441b9e75bdaa564551568 *data/Rdata.rdx
2ab20d812cb9c438c10569f568830474 *doc/SGSeq.R
290a30080fce50b9422455da649286a3 *doc/SGSeq.Rmd
575a30cb7c2638882f64cf955ad5fb0e *doc/SGSeq.html
26a827488ea280a0a53b9fdc2455f4e6 *doc/index.html
f635a290f6dd7bd6a571a748b9b4ce2d *extdata/bams/N1.bam
10e437ecd83a1648f6feb28efd666a3d *extdata/bams/N1.bam.bai
6ae387d023817532da8ab3273731c6b7 *extdata/bams/N2.bam
7bc7623be9eb5b52f7d272b1e54d7c1f *extdata/bams/N2.bam.bai
e07e5bf79859b2028cb402c079577316 *extdata/bams/N3.bam
20cd985ef7ffa218da184f187ce50dea *extdata/bams/N3.bam.bai
b0a8a2796e4cd67d1c5231481dc298f7 *extdata/bams/N4.bam
c14641aca82d7b303f9ab448ce5b4f2e *extdata/bams/N4.bam.bai
dab9dc6d74c1e618b960baa0148740af *extdata/bams/T1.bam
f1bd4bdf90f83ca520ab1fba63cea726 *extdata/bams/T1.bam.bai
6e43c101708a4040937e389b9888832b *extdata/bams/T2.bam
b48cfbe384de76d521dff37845bb811b *extdata/bams/T2.bam.bai
1751240dde82ab77847b18cc93ce4b31 *extdata/bams/T3.bam
b0c6a086071d7f7d5c5153cfc1778147 *extdata/bams/T3.bam.bai
0ed841f711101c6ed48133d5cf35c9df *extdata/bams/T4.bam
33e452914d0a92a7287b5902f7a223d3 *extdata/bams/T4.bam.bai
7d31b555fc3a0ef493db24637a69d7b5 *help/AnIndex
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1c22cda2737b717ecbeee4fbbae5db2f *help/SGSeq.rdx
a8e64660c2f8e32c7d3cb695b7b93a86 *help/aliases.rds
8069fb5d2764c3a0745e9716e84ca537 *help/paths.rds
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36271f4d462b578fa7089b7359ed64c9 *html/SGVariants.html
0f5830d29c68228510535cb0e7f67d75 *html/TxFeatures.html
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08fea1ecd8d2158c46babf312f42483a *html/assays.html
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d98a5a2247b9e02f1c8bd58590ed0912 *html/convertToTxFeatures.html
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880f9336ce30834bb61570c4fdaa9032 *html/getSGFeatureCounts.html
2fdad23c32690cfac4ae89d0bbfb2212 *html/getSGFeatureCountsPerSample.html
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4a32039ba4a34c6f3a08c9bfa309f93f *html/importTranscripts.html
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1332a2cb765e2ffb7d7c8f7f95392f2c *html/mergeTxFeatures.html
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8e70946846f3907ca4ab0e15ab5ffbfb *html/predictExonsTerminal.html
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2182a5b23ca5df3ccc62763d570fe894 *html/predictVariantEffects.html
0b7428285d3ccfc388b078c95e45136e *html/processTerminalExons.html
0abdacc4277e96727b5ac97582403f46 *html/removeExonsIsolated.html
32297002359b67d1fc46b23deea18267 *html/sgf_ann.html
afaa13b9bc538df9db991b2c292b1499 *html/sgf_pred.html
4b490594237062560bed64afa41decf6 *html/sgfc_ann.html
2ea41764cd933572c5060e0e1613c944 *html/sgfc_pred.html
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a05367f16fdff92a49bf1bea76308fde *html/sgv_pred.html
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d51e1d749fabc3ac70fae7a30be22186 *html/sgvc_pred.html
9166ebfb13eeb2a74ea9c1c222582d17 *html/sgvc_pred_from_bam.html
42023afd3fbffb4a6ffc15ee70c562a3 *html/si.html
d38164e6f49589d68bec5886a79ab54b *html/slots.html
46b57bc1df91854f39028c38425ba1db *html/splicesiteOverlap.html
5726f29c2c0d218a0ad5e0c0ab7e72e8 *html/tx.html
50c833a5c432b43d4b61440268b705f8 *html/txf_ann.html
90ee7fa6b174f9e772b9e765a4a50c7e *html/txf_pred.html
4a1400ece7a76c849e21537d8bc9bfe9 *html/updateObject.html
916134d923047d0d83dd3cac336afac2 *scripts/createExampleData.R
62e6eb32b9d91e2d2e22f8a0ebe3999b *unitTests/test_analyzeFeatures.R
41062843ebebbec77ddf6fbc1eebe14b *unitTests/test_analyzeVariants.R
1a72ecb53227d3f1a1b3ea90297e911f *unitTests/test_annotate.R
445456f7b917f405ff4ffa9c6f0c305a *unitTests/test_classes.R
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66d59bb78d566b15751680e3d3fa1c1d *unitTests/test_getSGVariantCounts.R
82ac16fa44fac098647f31ac89dfa696 *unitTests/test_mergeTxFeatures.R
9212fb3c627df1a8f0db8e52fa7b5da2 *unitTests/test_predictTxFeatures.R
75201f127c6a3884632ed88c88714ee0 *unitTests/test_predictVariantEffects.R
