getCounts {SCnorm}R Documentation

getCounts

Description

Convenient helper function to extract the normalized expression matrix from the SummarizedExperiment

Usage

getCounts(DATA)

Arguments

DATA

An object of class SummarizedExperiment that contains single-cell expression and metadata

Value

A matrix which contains the count data where genes are in rows and cells are in columns

Examples

data(ExampleSimSCData)
ExampleData <- SummarizedExperiment::SummarizedExperiment(assays=list("Counts"=ExampleSimSCData))
myData <- getCounts(ExampleData)
[Package SCnorm version 1.2.1 Index]