Container for results of fold change copy number estimation.

Description

Contains the genomic coordinates of regions, and fold change estimates.

Constructor

CopyEstimate(windows, unadj.CN, unadj.CN.seg) Creates a CopyEstimate object.

windows

A GRanges object.

unadj.CN

A matrix of fold changes.

unadj.CN.seg

A GRangesList object holding the segmentation results.

Additional Slots

These are added to by absoluteCN or relativeCN

type

A flag that contains if the copy number data is absolute or relative.