# Generated by roxygen2: do not edit by hand

export(AddToGroup)
export(CytoscapeConnection)
export(CytoscapeWindow)
export(RemoveFromGroup)
export(addCyEdge)
export(addCyEdges)
export(addCyNode)
export(addCyNodes)
export(addGraphToGraph)
export(clearEdgePropertyBypass)
export(clearNetworkCenterBypass)
export(clearNetworkPropertyBypass)
export(clearNetworkZoomBypass)
export(clearNodeOpacityBypass)
export(clearNodePropertyBypass)
export(clearSelection)
export(cloneNetwork)
export(closeSession)
export(collapseGroup)
export(commandEcho)
export(commandOpenDialog)
export(commandPause)
export(commandQuit)
export(commandRunFile)
export(commandSleep)
export(commandsAPI)
export(commandsGET)
export(commandsHelp)
export(commandsPOST)
export(commandsRun)
export(connectToNewestCyWindow)
export(copyCytoscapeNetwork)
export(copyVisualStyle)
export(createGraphFromNetwork)
export(createGroup)
export(createIgraphFromNetwork)
export(createNetworkFromDataFrames)
export(createNetworkFromGraph)
export(createNetworkFromIgraph)
export(createSubnetwork)
export(createVisualStyle)
export(createWindow)
export(createWindowFromSelection)
export(cy2.edge.names)
export(cyPlot)
export(cybrowserClose)
export(cybrowserDialog)
export(cybrowserHide)
export(cybrowserList)
export(cybrowserSend)
export(cybrowserShow)
export(cybrowserVersion)
export(cyrestAPI)
export(cyrestDELETE)
export(cyrestGET)
export(cyrestPOST)
export(cyrestPUT)
export(cytoscapeApiVersions)
export(cytoscapeFreeMemory)
export(cytoscapeMemoryStatus)
export(cytoscapeNumberOfCores)
export(cytoscapePing)
export(cytoscapeVersionInfo)
export(deleteAllNetworks)
export(deleteAllWindows)
export(deleteEdgeAttribute)
export(deleteGroup)
export(deleteNetwork)
export(deleteNodeAttribute)
export(deleteSelectedEdges)
export(deleteSelectedNodes)
export(deleteTableColumn)
export(deleteWindow)
export(demoSimpleGraph)
export(diffusionAdvanced)
export(diffusionBasic)
export(disableApp)
export(displayGraph)
export(dockPanel)
export(eda)
export(eda.names)
export(enableApp)
export(existing.CytoscapeWindow)
export(expandGroup)
export(exportImage)
export(exportNetwork)
export(exportNetworkToNDEx)
export(exportVisualStyles)
export(fitContent)
export(fitSelectedContent)
export(floatPanel)
export(getAdjacentEdgeNames)
export(getAllEdgeAttributes)
export(getAllEdges)
export(getAllNodeAttributes)
export(getAllNodes)
export(getAppInformation)
export(getAppStatus)
export(getAppUpdates)
export(getArrowShapes)
export(getAttributeClassNames)
export(getAvailableApps)
export(getBackgroundColorDefault)
export(getCenter)
export(getCollectionList)
export(getCollectionName)
export(getCollectionNetworks)
export(getCollectionSuid)
export(getCommandNames)
export(getCommandNamesWithinNamespace)
export(getDefaultEdgeReverseSelectionColor)
export(getDefaultNodeReverseSelectionColor)
export(getDirectlyModifiableVisualProperties)
export(getDisabledApps)
export(getEdgeAttribute)
export(getEdgeAttributeNames)
export(getEdgeColor)
export(getEdgeCount)
export(getEdgeLineStyle)
export(getEdgeLineWidth)
export(getEdgeProperty)
export(getEdgeSelectionColorDefault)
export(getEdgeTargetArrowShape)
export(getFirstNeighbors)
export(getGraph)
export(getGraphFromCyWindow)
export(getGroupInfo)
export(getInstalledApps)
export(getLayoutNameMapping)
export(getLayoutNames)
export(getLayoutPropertyNames)
export(getLayoutPropertyType)
export(getLayoutPropertyValue)
export(getLineStyles)
export(getNetworkCenter)
export(getNetworkCount)
export(getNetworkList)
export(getNetworkNDExId)
export(getNetworkName)
export(getNetworkProperty)
export(getNetworkSuid)
export(getNetworkViewSuid)
export(getNetworkViews)
export(getNetworkZoom)
export(getNodeAttribute)
export(getNodeAttributeNames)
export(getNodeColor)
export(getNodeCount)
export(getNodeHeight)
export(getNodePosition)
export(getNodeProperty)
export(getNodeSelectionColorDefault)
export(getNodeShapes)
export(getNodeSize)
export(getNodeWidth)
export(getSelectedEdgeCount)
export(getSelectedEdges)
export(getSelectedNodeCount)
export(getSelectedNodes)
export(getStyleDependencies)
export(getTableColumnNames)
export(getTableColumnTypes)
export(getTableColumns)
export(getTableValue)
export(getUninstalledApps)
export(getViewCoordinates)
export(getVisualPropertyDefault)
export(getVisualPropertyNames)
export(getVisualStyleNames)
export(getWindowCount)
export(getWindowID)
export(getWindowList)
export(getZoom)
export(hideAllPanels)
export(hideEdges)
export(hideNodes)
export(hidePanel)
export(hideSelectedEdges)
export(hideSelectedNodes)
export(importNetworkFromFile)
export(importNetworkFromNDEx)
export(initEdgeAttribute)
export(initNodeAttribute)
export(installApp)
export(invertEdgeSelection)
export(invertNodeSelection)
export(layoutCopycat)
export(layoutNetwork)
export(listGroups)
export(loadTableData)
export(lockNodeDimensions)
export(makeRandomGraph)
export(makeSimpleGraph)
export(makeSimpleIgraph)
export(mapTableColumn)
export(mapVisualProperty)
export(matchArrowColorToEdge)
export(noa)
export(noa.names)
export(openAppStore)
export(openSession)
export(ping)
export(pluginVersion)
export(predictTimeToDisplayGraph)
export(raiseWindow)
export(redraw)
export(renameCytoscapeNetwork)
export(renameNetwork)
export(renameTableColumn)
export(restoreLayout)
export(saveImage)
export(saveLayout)
export(saveNetwork)
export(saveSession)
export(selectAllEdges)
export(selectAllNodes)
export(selectEdges)
export(selectEdgesAdjacentToSelectedNodes)
export(selectEdgesConnectedBySelectedNodes)
export(selectEdgesConnectingSelectedNodes)
export(selectFirstNeighbors)
export(selectFirstNeighborsOfSelectedNodes)
export(selectNodes)
export(sendEdges)
export(sendNodes)
export(setBackgroundColorDefault)
export(setCenter)
export(setCommandProperties)
export(setCurrentNetwork)
export(setCurrentView)
export(setDefaultEdgeReverseSelectionColor)
export(setDefaultNodeReverseSelectionColor)
export(setEdgeAttributes)
export(setEdgeColorBypass)
export(setEdgeColorDefault)
export(setEdgeColorMapping)
export(setEdgeFontFaceBypass)
export(setEdgeFontSizeBypass)
export(setEdgeFontSizeDefault)
export(setEdgeLabelBypass)
export(setEdgeLabelColorBypass)
export(setEdgeLabelMapping)
export(setEdgeLabelOpacityBypass)
export(setEdgeLineStyleBypass)
export(setEdgeLineStyleDefault)
export(setEdgeLineStyleMapping)
export(setEdgeLineWidthBypass)
export(setEdgeLineWidthDefault)
export(setEdgeLineWidthMapping)
export(setEdgeOpacityBypass)
export(setEdgeOpacityMapping)
export(setEdgePropertyBypass)
export(setEdgeSelectionColorDefault)
export(setEdgeSourceArrowColorBypass)
export(setEdgeSourceArrowColorDefault)
export(setEdgeSourceArrowColorMapping)
export(setEdgeSourceArrowMapping)
export(setEdgeSourceArrowShapeBypass)
export(setEdgeSourceArrowShapeDefault)
export(setEdgeTargetArrowColorBypass)
export(setEdgeTargetArrowColorDefault)
export(setEdgeTargetArrowColorMapping)
export(setEdgeTargetArrowMapping)
export(setEdgeTargetArrowShapeBypass)
export(setEdgeTargetArrowShapeDefault)
export(setEdgeTooltipBypass)
export(setEdgeTooltipMapping)
export(setGraph)
export(setLayoutProperties)
export(setNetworkCenterBypass)
export(setNetworkPropertyBypass)
export(setNetworkZoomBypass)
export(setNodeAttributes)
export(setNodeBorderColorBypass)
export(setNodeBorderColorDefault)
export(setNodeBorderColorMapping)
export(setNodeBorderOpacityBypass)
export(setNodeBorderWidthBypass)
export(setNodeBorderWidthDefault)
export(setNodeBorderWidthMapping)
export(setNodeColorBypass)
export(setNodeColorDefault)
export(setNodeColorMapping)
export(setNodeComboOpacityMapping)
export(setNodeFillOpacityBypass)
export(setNodeFontSizeBypass)
export(setNodeFontSizeDefault)
export(setNodeHeightBypass)
export(setNodeLabelBypass)
export(setNodeLabelColorBypass)
export(setNodeLabelColorDefault)
export(setNodeLabelMapping)
export(setNodeLabelOpacityBypass)
export(setNodeOpacityBypass)
export(setNodePosition)
export(setNodePropertyBypass)
export(setNodeSelectionColorDefault)
export(setNodeShapeBypass)
export(setNodeShapeDefault)
export(setNodeShapeMapping)
export(setNodeSizeBypass)
export(setNodeSizeDefault)
export(setNodeSizeMapping)
export(setNodeTooltipMapping)
export(setNodeWidthBypass)
export(setStyleDependencies)
export(setTooltipDismissDelay)
export(setTooltipInitialDelay)
export(setVisualPropertyDefault)
export(setVisualStyle)
export(setWindowSize)
export(setZoom)
export(sfn)
export(showGraphicsDetails)
export(syncNodeCustomGraphicsSize)
export(toggleGraphicsDetails)
export(unhideAll)
export(unhideEdges)
export(unhideNodes)
export(uninstallApp)
export(updateApp)
export(updateNetworkInNDEx)
export(updateStyleDefaults)
export(updateStyleMapping)
importFrom(BiocGenerics,cbind)
importFrom(BiocGenerics,colnames)
importFrom(BiocGenerics,do.call)
importFrom(BiocGenerics,setdiff)
importFrom(RJSONIO,fromJSON)
importFrom(RJSONIO,isValidJSON)
importFrom(RJSONIO,toJSON)
importFrom(XML,htmlParse)
importFrom(XML,xmlValue)
importFrom(XML,xpathSApply)
importFrom(graph,addEdge)
importFrom(graph,addNode)
importFrom(graph,edgeData)
importFrom(graph,edgeDataDefaults)
importFrom(graph,nodeData)
importFrom(graph,nodeDataDefaults)
importFrom(httr,DELETE)
importFrom(httr,GET)
importFrom(httr,POST)
importFrom(httr,PUT)
importFrom(httr,content_type_json)
importFrom(igraph,as_data_frame)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,igraph.from.graphNEL)
importFrom(igraph,igraph.to.graphNEL)
importFrom(igraph,make_graph)
importFrom(igraph,set.edge.attribute)
importFrom(igraph,set.vertex.attribute)
importFrom(methods,new)
importFrom(stats,setNames)
importFrom(utils,URLencode)
importFrom(utils,browseURL)
importFrom(utils,head)
importFrom(utils,tail)
