R: Plot frequency of response for each group

plot_inter {Pviz}

R Documentation

Plot frequency of response for each group

Plot an axis and the frequency of response of each group, averaged by peptides at each position.

plot_inter(restab, sequence = NULL, from = 0, to = max(restab$position),
  ...)

`restab`	A `data.frame`. The result of a peptide microarray analysis, as returned by `pepStat`'s `restab` function.
`sequence`	A `character` or an `AAString`. If not NULL, the sequence of the `ProteinSequenceTrack` to plot. It should be the sequence of the reference genome used in the `peptideSet` that generated the `restab`.
`from`	A `numeric`, the start coordinate of the plot.
`to`	A `numeric`, the end coordinate of the plot.
`...`	Aditional arguments to be passed to `plotTracks`.

Renan Sauteraud

if(require(pepDat)){
  data(restab_aggregate)
  plot_inter(restab_aggregate)
}

[Package Pviz version 1.14.0 Index]