R: Plot frequency of response for a single clade.

plot_clade {Pviz}

R Documentation

Plot frequency of response for a single clade.

Plot an axis and the frequency of response of a single selected clade.

plot_clade(restab, clade, sequence = NULL, from = 0,
  to = max(restab$position), ...)

`restab`	A `data.frame`. The result of a peptide microarray analysis, as returned by `pepStat`'s `restab` function.
`clade`	A `character`. The clade to plot.
`sequence`	An optional `character` or `AAString`. The sequence of the `ProteinSequenceTrack` to plot. It should be the sequence of the reference genome used in the `peptideSet` that generated the `restab`.
`from`	A `numeric`, the start coordinate of the plot.
`to`	A `numeric`, the end coordinate of the plot.
`...`	Aditional arguments to be passed to `plotTracks`.

Renan Sauteraud

if(require(pepDat)){
  data(restab)
  plot_clade(restab, clade = c("A", "M"))
}

[Package Pviz version 1.14.0 Index]