Pparams-class           Class '"Pparams"'
Proteins-class          The 'Proteins' Class for Proteomics Data And
                        Meta-Data
calculateHeavyLabels    Calculate heavy labeled peptides
etrid2grl               From a transcript identifier to 'GRanges'
                        object
isReverse               Are all the ranges on the same strand
mapToGenome-methods     Map range coordinates between proteins and
                        genome space
p                       Data accompanying the 'Pbase' package
plotAsAnnotationTrack   Plot gene region and annotation tracks
proteinCoding-methods   Only keep protein coding ranges
