findTaxonomy {PathoStat} | R Documentation

## Find the taxonomy for each taxon ids

### Description

Find the taxonomy for each taxon ids

### Usage

    findTaxonomy(tids)

### Arguments

`tids` | Given taxonomy ids

### Value

taxondata Data with the taxonomy information

### Examples

    example_data_dir <- system.file("example/data", package = "PathoStat")
    pathoreport_file_suffix <- "-sam-report.tsv"
    datlist <- readPathoscopeData(example_data_dir, pathoreport_file_suffix)
    dat <- datlist$data
    ids <- rownames(dat)
    tids <- unlist(lapply(ids, FUN = grepTid))
    taxonLevels <- findTaxonomy(tids[1:5])

[Package PathoStat version 1.6.1 Index]