phyloseq_to_edgeR {PathoStat} | R Documentation

## Convert phyloseq OTU count data into DGEList for edgeR package

### Description

Further details.

### Usage

    phyloseq_to_edgeR(physeq, group, method = "RLE", ...)

### Arguments

`physeq` | (Required).
`group` | (Required). A character vector or factor giving the experimental group/condition for each sample/library.
`method` | (Optional).
`...` | Additional arguments passed on to

### Value

dispersion

### Examples

    data_dir_test <- system.file("data", package = "PathoStat")
    pstat_test <- loadPstat(indir=data_dir_test,
    infileName="pstat_data_2_L1.rda")
    phyloseq_to_edgeR(pstat_test, group="Sex")

[Package PathoStat version 1.6.1 Index]