ai {Path2PPI} | R Documentation

## Data set to predict autophagy induction in Podospora anserina

### Description

This data set consists of all data files necessary to predict the putative interactions of the induction step of autophagy in Podospora anserina by means of the corresponding PPIs in human and yeast.

### Usage

    data("ai")

### Format

human.ai.irefindex: Data frames with 1694 observations of 54 variables. yeast.ai.irefindex: Data frames with 3840 observations of 54 variables. pa2human.ai.homologs: Data frames with 261 observations of 12 variables. pa2yeast.ai.homologs: Data frames with 98 observations of 12 variables. human.ai.proteins: Named character vector with 5 elements. yeast.ai.proteins: Named character vector with 7 elements.

### Details

Data frames `human.ai.irefindex` and `yeast.ai.irefindex` consists of all relevant interactions of the corresponding iRefIndex files. The two data frames `pa2human.ai.homologs` and `pa2yeast.ai.homologs` are the necessary parts of the result files from the BLAST searches of the P. anserina proteom against the proteoms of human and yeast. The named character vectors `human.ai.proteins` and `yeast.ai.proteins` consists of the proteins involved in the induction process of autophagy in human and yeast.

### Value

Four data frames and two named character vectors (see above).

### References

Camacho, C. et al. (2009). BLAST+: architecture and applications. BMC Bioinformatics, 10(1), 421.

Razick, S. et al. (2008). iRefIndex: a consolidated protein interaction database with provenance. BMC Bioinformatics, 9(1), 405.

### Examples

    data(ai)

[Package Path2PPI version 1.10.0 Index]