| summarize {PANR} | R Documentation |
The function helps print a summary of an object of S4 class BetaMixture
or PAN.
summarize(object, what='ALL', ...)
object |
an object of S4 class |
what |
a character value specifying what to print (see details). |
... |
not in use, only for further extension. |
This function print a summary of an object of BetaMixture or PAN.
The function is also called by S4 method show, which prints only
a short message about the input parameters and data.
For an object of class BetaMixture:
If what='input', the function prints to screen a summary of input
parameters;
If what='fitNULL', the function prints to screen a summary of
fitting results for the NULL distribution.
If what='fitBM', the function prints to screen a summary of
fitting results for the beta-mixture model.
If what='ALL', all above messages will be printed.
For an object of class PAN:
If what='input', the function prints to screen a summary of input
object(s) of class BetaMixture;
If what='graph', the function prints to screen a summary of inferred
posterior association network;
If what='module', the function prints to screen a summary of
functional gene modules;
If what='ALL', all above messages will be printed.
Xin Wang xw264@cam.ac.uk
Xin Wang, Mauro Castro, Klaas W. Mulder and Florian Markowetz, Posterior association networks and enriched functional gene modules inferred from rich phenotypic perturbation screens, in preparation.
data(bm) summarize(bm1, what='ALL')