R: subTAXset

subTAXset {OTUbase}

R Documentation

subTAXset

Description

Function to get a subset of an TAXset object.

Usage


subTAXset(object, samples)

Arguments

`object`	An TAXset object
`samples`	A list of sample names

Value

subTAXset returns an TAXset

Examples


## locate directory with data
dirPath <- system.file("extdata/Sogin_2006", package="OTUbase")

## read in data into TAXset object
soginTAX <- readTAXset(dirPath=dirPath, samplefile="sogin.groups", fastafile="sogin.fasta", taxfile="sogin.unique.fix.tax",namefile="sogin.names", sampleADF="sample_metadata.txt")

## get subset of soginTAX

subTAXset(soginTAX, samples=getSamples(soginTAX, colnum="Site", value="Labrador", exact=FALSE))

[Package OTUbase version 1.30.0 Index]