| fpkm_calc {ORFik} | R Documentation |
A helper for [fpkm()] Normally use function [fpkm()], if you want unusual normalization , you can use this. Short for: Fragments per kilobase of transcript per million fragments Normally used in Translations efficiency calculations
fpkm_calc(counts, lengthSize, librarySize)
counts |
a list, # of read hits per group |
lengthSize |
a list of lengths per group |
librarySize |
a numeric of size 1, the # of reads in library |
a numeric vector
doi: 10.1038/nbt.1621
Other features: computeFeaturesCage,
computeFeatures,
disengagementScore,
distToCds, entropy,
floss, fpkm,
fractionLength,
insideOutsideORF, isInFrame,
isOverlapping,
kozakSequenceScore, orfScore,
rankOrder,
ribosomeReleaseScore,
ribosomeStallingScore,
subsetCoverage,
translationalEff