downstreamOfPerGroup {ORFik} | R Documentation

## Get rest of objects downstream

### Description

Per group get the part downstream of position defined in downstreamOf downstreamOf(tx, ORFik:::stopSites(cds, asGR = F)) will return the 3' utrs per transcript as GRangesList, usually used for interesting parts of the transcripts, like upstream open reading frames(uorf). downstreamOf +/- 1 is start/end site of transformed tx's, depending on strand

### Usage

    downstreamOfPerGroup(tx, downstreamOf)

### Arguments

`tx` | a `GRangesList`, usually of Transcripts to be changed
`downstreamOf` | a vector of integers, for each group in tx, where is the new start point of first valid exon.

### Value

a GRangesList of downstream part

[Package ORFik version 1.0.0 Index]