txSeqsFromFa {ORFik} | R Documentation

## Get transcript sequence from a GrangesList and a faFile or BSgenome

### Description

A small safety wrapper around GenomicFeatures::extractTranscriptSeqs

### Usage

    txSeqsFromFa(grl, faFile, is.sorted = FALSE)

### Arguments

`grl` | a GRangesList object
`faFile` | FaFile or BSgenome used to find the transcripts,
`is.sorted` | a speedup, if you know the ranges are sorted

### Value

a DNAStringSet of the transcript sequences

[Package ORFik version 1.0.0 Index]