subsetCoverage {ORFik} | R Documentation

## Subset GRanges to get coverage.

### Description

GRanges object should be beforehand tiled to size of 1. This subsetting takes account for strand.

### Usage

    subsetCoverage(cov, y)

### Arguments

`cov` | A coverage object from coverage()
`y` | GRanges object for which coverage should be extracted

### Value

numeric vector of coverage of input GRanges object

### See Also

Other features: `computeFeaturesCage`, `computeFeatures`, `disengagementScore`, `distToCds`, `entropy`, `floss`, `fpkm_calc`, `fpkm`, `fractionLength`, `insideOutsideORF`, `isInFrame`, `isOverlapping`, `kozakSequenceScore`, `orfScore`, `rankOrder`, `ribosomeReleaseScore`, `ribosomeStallingScore`, `translationalEff`

[Package ORFik version 1.0.0 Index]