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| $-method | Accessing/modifying slot information |
| $<--method | Accessing/modifying slot information |
| anyReplicated | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
| anyReplicated-method | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
| assay-method | A container for multi-experiment data |
| assay-method | An integrative multi-assay class for experiment data |
| assays-method | A container for multi-experiment data |
| assays-method | An integrative multi-assay class for experiment data |
| c-method | An integrative multi-assay class for experiment data |
| coerce | A container for multi-experiment data |
| coerce-method | A container for multi-experiment data |
| coerce-method | An integrative and matched-samples class for experiment data |
| colData-method | Accessing/modifying slot information |
| colData<--method | Accessing/modifying slot information |
| complete.cases-method | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
| DataFrame | Objects exported from other packages |
| dimnames-method | A container for multi-experiment data |
| dimnames-method | An integrative multi-assay class for experiment data |
| duplicated | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
| duplicated-method | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
| ExperimentList | Construct an 'ExperimentList' object for the 'MultiAssayExperiment' object slot. |
| ExperimentList-class | A container for multi-experiment data |
| experiments | Accessing/modifying slot information |
| experiments-method | Accessing/modifying slot information |
| experiments<- | Accessing/modifying slot information |
| experiments<--method | Accessing/modifying slot information |
| hasAssay | Checking assay method for any class |
| hasRowRanges | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
| hasRowRanges-method | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
| intersectColumns | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
| intersectRows | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
| isEmpty-method | A container for multi-experiment data |
| isEmpty-method | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
| length-method | An integrative multi-assay class for experiment data |
| listToMap | Convert map from data.frame or DataFrame to list and vice versa |
| longFormat | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
| mapToList | Convert map from data.frame or DataFrame to list and vice versa |
| MatchedAssayExperiment | An integrative and matched-samples class for experiment data |
| MatchedAssayExperiment-class | An integrative and matched-samples class for experiment data |
| mergeReplicates | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
| mergeReplicates-method | A container for multi-experiment data |
| mergeReplicates-method | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
| metadata-method | Accessing/modifying slot information |
| metadata<--method | Accessing/modifying slot information |
| miniACC | Adrenocortical Carcinoma (ACC) MultiAssayExperiment |
| MultiAssayExperiment | Construct a 'MultiAssayExperiment' object |
| MultiAssayExperiment-class | An integrative multi-assay class for experiment data |
| MultiAssayExperiment-helpers | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
| MultiAssayExperiment-methods | Accessing/modifying slot information |
| names-method | An integrative multi-assay class for experiment data |
| prepMultiAssay | Prepare a 'MultiAssayExperiment' instance |
| reexports | Objects exported from other packages |
| replicated | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
| replicated-method | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
| sampleMap | Accessing/modifying slot information |
| sampleMap-method | Accessing/modifying slot information |
| sampleMap<- | Accessing/modifying slot information |
| sampleMap<--method | Accessing/modifying slot information |
| show-method | A container for multi-experiment data |
| show-method | An integrative multi-assay class for experiment data |
| subset | Subsetting a MultiAssayExperiment object |
| subsetBy | Subsetting a MultiAssayExperiment object |
| subsetByAssay | Subsetting a MultiAssayExperiment object |
| subsetByAssay-method | Subsetting a MultiAssayExperiment object |
| subsetByColData | Subsetting a MultiAssayExperiment object |
| subsetByColData-method | Subsetting a MultiAssayExperiment object |
| subsetByColumn | Subsetting a MultiAssayExperiment object |
| subsetByColumn-method | Subsetting a MultiAssayExperiment object |
| subsetByRow | Subsetting a MultiAssayExperiment object |
| subsetByRow-method | Subsetting a MultiAssayExperiment object |
| updateObject-method | An integrative multi-assay class for experiment data |
| upsetSamples | Create a generalized Venn Diagram analog for sample membership in multiple assays, using the upset algorithm in 'UpSetR' |
| wideFormat | A group of helper functions for manipulating and cleaning a MultiAssayExperiment |
| [-method | Subsetting a MultiAssayExperiment object |
| [[-method | Subsetting a MultiAssayExperiment object |
| [[<--method | Subsetting a MultiAssayExperiment object |