calculateRelevantSNPs {MEAL} | R Documentation

## Calculate the SNPs correlated to cpgs

### Description

This function estimates the correlation between the snps and the cpgs. For each pair cpg-SNP the p-value is returned.

### Usage

    calculateRelevantSNPs(set, snps, num_cores = 1)

### Arguments

`set` | `MethylationSet`
`snps` | `SnpSet`
`num_cores` | Numeric with the number of cores to be used.

### Value

Data.frame with the pvalues for pairs SNPs-cpgs. SNPs are in the rows and cpgs in the columns.

### Examples

    ## Not run:
    ## betamatrix: matrix of beta values
    ## phenodf: data.frame with the phenotypes
    ## snpsobject: SnpSet
    set <- prepareMethylationSet(matrix = betamatrix, phenotypes = phenodf)
    relevantSNPs <- calculateRelevantSNPs(set, snpsobject)

    ## End(Not run)

[Package MEAL version 1.10.1 Index]