R: Get IDs For Co-Expressed Genes from The 'LINC' Class

getcoexpr {LINC}

R Documentation

Get IDs For Co-Expressed Genes from The 'LINC' Class

Description

getcoexpr provides access to co-expressed genes of a query in 'LINC' objects.

Usage

getcoexpr(input,
          query   = NULL,
          keyType = NULL)

Arguments

`input`	a `'LINCcluster'` or `'LINCsingle'` object
`query`	for a `'LINCcluster'` the name of the query gene
`keyType`	The `'keyType'` (gene system) for the output.

Value

a vector containing the co-expressed genes for a query

Author(s)

Manuel Goepferich

Examples

data(BRAIN_EXPR)
# Get the co-expressed genes for the query gene '55384' alias MEG3
getcoexpr(crbl_cluster, query = "55384")

# The co-expressed genes can also be returned as gene symbols.
getcoexpr(crbl_cluster, query = "55384", keyType = 'SYMBOL')

[Package LINC version 1.8.0 Index]