JASPAR2018 object

Description

The JASPAR2018 object class is a thin class for storing the path of JASPAR2018 style SQLite file.

Slots

db:

Object of class "character": a character string of the path of SQLite file.

Author(s)

Ge Tan

Examples

    library(TFBSTools)
    opts <- list()
    opts[["species"]] <- 9606
    opts[["type"]] <- "SELEX"
    opts[["all_versions"]] <- TRUE
    PFMatrixList <- getMatrixSet(JASPAR2018, opts)

    opts2 <- list()
    opts2[["type"]] <- "SELEX"
    PFMatrixList2 <- getMatrixSet(JASPAR2018, opts2)