Extract Whether P-values were Corrected.

Description

This function allows the user to extract information about whether the p-values were calibrated as described in Ferguson et al or not.

Usage

extractCalibrationStatus(
    switchAnalyzeRlist
)

Arguments

Value

A data.frame where it for each comparison was indicated (via a logical) whether the p-value correction was performed or not.

Author(s)

Kristoffer Vitting-Seerup

References

• Vitting-Seerup et al. The Landscape of Isoform Switches in Human Cancers. Mol. Cancer Res. (2017).

• Ferguson JP, Palejev D: P-value calibration fro multiple testing problems in genomics. Stat. Appl. Genet. Mol. Biol. 2014, 13:659-673.

See Also

isoformSwitchTest

Examples

# Load example data and prefilter
data("exampleSwitchList")
exampleSwitchList <- preFilter(exampleSwitchList)

# Perfom test
exampleSwitchListAnalyzed <- isoformSwitchTest(exampleSwitchList)

# extract whether p-value callibration was performed
extractCalibrationStatus(exampleSwitchListAnalyzed)