extractCalibrationStatus {IsoformSwitchAnalyzeR} | R Documentation

## Extract Whether P-values were Corrected.

### Description

This function allows the user to extract information about whether the p-values were calibrated as described in Ferguson et al or not.

### Usage

    extractCalibrationStatus(
        switchAnalyzeRlist
    )

### Arguments

`switchAnalyzeRlist` | A `switchAnalyzeRlist` object which have been analyzed with isoformSwitchTest.

### Value

A data.frame where it for each comparison was indicated (via a logical) whether the p-value correction was performed or not.

### Author(s)

Kristoffer Vitting-Seerup

### References

- Vitting-Seerup et al. The Landscape of Isoform Switches in Human Cancers. Mol. Cancer Res. (2017).

- Ferguson JP, Palejev D: P-value calibration fro multiple testing problems in genomics. Stat. Appl. Genet. Mol. Biol. 2014, 13:659-673.

### See Also

`isoformSwitchTest`

### Examples

    # Load example data and prefilter
    data("exampleSwitchList")
    exampleSwitchList <- preFilter(exampleSwitchList)

    # Perfom test
    exampleSwitchListAnalyzed <- isoformSwitchTest(exampleSwitchList)

    # extract whether p-value callibration was performed
    extractCalibrationStatus(exampleSwitchListAnalyzed)

[Package IsoformSwitchAnalyzeR version 1.2.0 Index]