prepareCuffExample {IsoformSwitchAnalyzeR} | R Documentation

## Prepare the Cufflinks example data

### Description

Prepare the Cufflinks example data set.

### Usage

    prepareCuffExample()

### Details

This helper function prepares the Cufflinks example dataset, including the example GTF-file.

### Value

A CuffSet object.

### Author(s)

Kristoffer Vitting-Seerup, Johannes Waage

### References

Vitting-Seerup K , Porse BT, Sandelin A, Waage J. (2014) spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data. BMC Bioinformatics 15:81.

### Examples

    #Load cufflinks example data
    cuffDB <- prepareCuffExample()

[Package IsoformSwitchAnalyzeR version 1.2.0 Index]