d2377c8c323d46c3a95ea596d6e8ae76 *DESCRIPTION
a17fa95104c91768d41f007f69b84f9e *INDEX
0aa24ed63ac25fa490e9aca13446f021 *Meta/Rd.rds
a3db2d5071842cee3ace2f88310227cb *Meta/data.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
f9daffe4dae48b9effab3d88e8471f19 *Meta/hsearch.rds
a5ca5049a87428e9db19bcf85cada619 *Meta/links.rds
9c50ec5aab5410f146050e4c99bc25e4 *Meta/nsInfo.rds
9de73624c4503a2cc0a244ec1e972662 *Meta/package.rds
a03889ef6d56382f76785a8540157073 *Meta/vignette.rds
33dcdf66a5988188e8f6519846492066 *NAMESPACE
bd63665cb9fd00afe07b7d6f42fae588 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/InPAS
14de8118b6ec78ab7dff08e841affb3f *R/InPAS.rdb
d7baaf4f7ce9c87f282a7fbbe33438a4 *R/InPAS.rdx
875c71c35a5962e7306813868c1c42bf *data/datalist
cafef1e05d73c03e50d90e87935f9ba0 *data/utr3.danRer10.rda
ad1b6f62495ed8cceb7981b4c5573152 *data/utr3.hg19.rda
12aa976301363411d421ba9a97ffbd63 *data/utr3.mm10.rda
5b81273fb6b03afdd0406eacb5f0c13d *doc/InPAS.R
33b70e8a2b37ca7d64c855a67f30a83c *doc/InPAS.Rmd
87855df2ba1355c44fcf46c2fbbfee1c *doc/InPAS.html
0015487fddc81e8e1f85316ea6ab499a *doc/index.html
fd39ad651f9d1366d13a0d741098d0b3 *extdata/Baf3.extract.bedgraph
5ca9fbb2ed92f46da01127f48a5188c0 *extdata/CPs.MAQC.rda
fa1e4fe6f1c33d7ca297fa12506a0d2a *extdata/UM15.extract.bedgraph
ceeb863c3251b708f8fc30ec7266b816 *extdata/coverage.MAQC.rda
30f138b6f554fb5e304e86e2d568663f *extdata/eset.MAQC.rda
74350e6c2359aed876a3af9b030509ae *extdata/polyA.rds
7960399b72ebfd0cace25f5682a04821 *help/AnIndex
5bb981c868e2faba1cd344df88197b76 *help/InPAS.rdb
86fd839b265266d55004a40dc7869aaa *help/InPAS.rdx
dcb12fe792da23118ed3b2afd5b781ac *help/aliases.rds
ab16f03100b8f02de71ad5dd94f24f04 *help/paths.rds
6919d4629dc2d1e5a2cf7842505ba2af *html/00Index.html
9cc988f46d8e01fe67e03c3408b7a594 *html/CPsite_estimation.html
f993a5536e47f56ff6590bfc510b21f2 *html/CPsites.html
3da309339b337621abb1a63f7c08e277 *html/InPAS-package.html
14fc0641578725798ce79ce632297111 *html/PAscore.html
a1cf9cef30865551a84de2ac6a0a73c7 *html/PAscore2.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
03d5b55fb8367b0a2a15999ab87e6e19 *html/UTR3TotalCoverage.html
37ccd07756308efa2aeb246c88d1b8e2 *html/UTR3eSet.html
abe956e298c2c6ffc81e23077d4bc555 *html/UTR3usage.html
c4adaa956041f0cbc4f0231c28287b9c *html/covThreshold.html
f5f34a1a88d1fdfee49e8102dc6f4a65 *html/coverageFromBedGraph.html
3525854219952d8d4f93e74eeb422dad *html/coverageRate.html
3da5332b4e6128cdcc47738f078f6992 *html/depthWeight.html
ec24ef918ead79b32a8754d437b4d27e *html/distalAdj.html
5accff5a0a338f9c0d7d645f5d3134ed *html/filterRes.html
f1fd57cb77b9e21bdf7999556543d132 *html/fisher.exact.test.html
8479c1a9f23c2c8f74381ccfa676f638 *html/get.regions.coverage.html
fc4c3c93cbff7d46e2579134dfc4a890 *html/getCov.html
c18df6d2f6888b9e48329b04a41d9fe2 *html/getUTR3eSet.html
ec4b0fe0e28a0bfacbfe11dbfed59854 *html/getUTR3region.html
dd2910817c32581725b72a8880fcd3e5 *html/inPAS.html
6ed2d1217370ced3870cc82ae9a9e771 *html/lastCDSusage.html
d653a2c560872f5233f758e8241d7c69 *html/limmaAnalyze.html
6118ac7b4f01b7dde38ff672e0022687 *html/optimalSegmentation.html
1e7b02980fe3d27a99c3157ccc0e58d3 *html/polishCPs.html
49b05df8f2d71221bb88878deeded8d1 *html/prepare4GSEA.html
def066e6373b9754e2f577c11cf5b984 *html/proximalAdj.html
5583412da032eaccfcb56968a4d8bb7c *html/proximalAdjByCleanUpdTSeq.html
042a17a4f8af2ea2e664ec1b065609f5 *html/proximalAdjByPWM.html
fb331e7acbd94b404af7c08f85ab7991 *html/removeUTR3__UTR3.html
ebc1225e53136dc0b21469c07a1c7381 *html/searchDistalCPs.html
42dcb26aef100f4df85c9b4775666791 *html/searchProximalCPs.html
09f6c3d4d68888a3cccca3d9dc181e10 *html/seqLen.html
043a05ad7c7d30541ada55e73a87e0c4 *html/singleGroupAnalyze.html
8eb2428c2f8b68b99d176ec6fcd7d7bd *html/singleSampleAnalyze.html
3c989c60f833a9f9eeef922b036ea8e8 *html/sortGR.html
e2b2e186d5ed71b9c49222ae0272b073 *html/testUsage.html
b4ad1ca1a2c2f052f84946a59727a0c5 *html/totalCoverage.html
c0e771e56917abbea0c8f99afb808a97 *html/trimSeqnames.html
17eaa8cc311d1be0eb0119aead4b098a *html/usage4plot.html
3705fdfed3619efe85b4b4af1c6953f3 *html/utr3.danRer10.html
b7abaea80d31b6e8d00d890c33dc85fc *html/utr3.hg19.html
942979c17d329a447ada85c773677c7d *html/utr3.mm10.html
852ec5438a67d6aeb75b2e5dc27b84ce *html/utr3Annotation.html
38d2149c99d2c91c32bdca9d602c1395 *html/utr3UsageEstimation.html
3df1a1f53f7bb5473600686885a6320c *html/valley.html
e5e4c4542ee4b8b7b4c6760ff1f4156a *html/zScoreThrethold.html
9c0364f33917c3e3b5d5cfd94a33dd0d *unitTests/test_CPsites.R
34a65fd52a724977969eb6861dd86ed3 *unitTests/test_coverageFromBedGraph.R
3102a9d14d794b5356a01a5a326e407b *unitTests/test_getUTR3eSet.R
