76b1e0277cdeca293af92a8fedcf9a45 *CITATION
ee42fc1fe495b314a9b4f2b30509fdc1 *DESCRIPTION
e28d972269a8009e8470b5f2170af6bc *INDEX
361908a91452805a20ea7ac9b7eef6a4 *Meta/Rd.rds
28c662e9d35369988549ca950ea8e2ed *Meta/data.rds
67d0d5964f3a04d88f780b55cff145de *Meta/features.rds
ce7267eabd8a687790c12464ac5365ba *Meta/hsearch.rds
ddb9f1ef4dab2d47b775382434b445c7 *Meta/links.rds
8680b025f8d8175046fa2f7d0a192727 *Meta/nsInfo.rds
1dc49a9cc769e092b89fd79e2a3bd5fc *Meta/package.rds
4542dc432fb4862b567ea56a069f185e *Meta/vignette.rds
79718fdf86de9ab7e626e590ba192864 *NAMESPACE
b83eae0cf23be06b9ff4e028d09f6383 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/Genominator
3366408fc1d40fefab16bb633a63dfef *R/Genominator.rdb
0c70eacf23dee318ed22ec623b5d2a2d *R/Genominator.rdx
fe2019eaaec3238deec714a7353433d1 *benchmark/idxTiming.R
92ffb0897b6ff67bf0d1970dc8427350 *data/chr1_yeast.rda
61a467dd982b7017a5fd9df7b4698b8c *data/yeastAnno.rda
9f6389f71fbffe74ddc5560740433b55 *data/yeastAnno.sources.rda
eee9d82b7d329f9d1fc6c3687a9ae6ce *doc/Genominator.R
97ca8f5c7a6831cfa5637f89910861d6 *doc/Genominator.Rnw
8a43f8be93c20a10e14f846123f596ce *doc/Genominator.pdf
584fac6f20fa92d02245ca34bf0fecd1 *doc/index.html
6d7a3961cb47d0368579b795c355015b *doc/plotting.R
ff6a3c5cbf66cd9c1efff3c23f777d0a *doc/plotting.Rnw
79ee4d0146d700ba30789f73d27cd15a *doc/plotting.pdf
41c1496165b1f5cbd57d872998a08356 *doc/withShortRead.R
596c1fc9a785f563ef59eb35f5815a90 *doc/withShortRead.Rnw
f444181e91ba2858f904a57611c2b168 *doc/withShortRead.pdf
a7e039d9604854b42b3034c0308be5a1 *help/AnIndex
6792073a46b8f73ec760c705cb28a92f *help/Genominator.rdb
1f1e908384b2acdbb7ab0a81d0b7aaea *help/Genominator.rdx
1d9777f83c2d6ce9be665844316a03ce *help/aliases.rds
689d5a903139f7962542289b278e31f5 *help/paths.rds
bd893b73c2ee97b11c0953517d8807e6 *html/00Index.html
7340a8240f23d6321a0ddf68286f34df *html/ExpData.html
f126b7a25dee620804758e54d1c26f51 *html/Genominator.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
79117a3de4d6bf662fe9a3dd9dd109ec *html/addPrimingWeights.html
f84a45e7d640d7140008e6c90da6c7c5 *html/aggregateExpData.html
8336af58afda234dcb190a84a937cdf4 *html/applyMapped.html
23e4e66753cfba16f2e3b11e55b4cc65 *html/collapseExpData.html
c39da8583225f0d492ff01aae0beb075 *html/computeCoverage.html
d1f858cc8f1de34a906447e3d98f0a47 *html/computePrimingWeights.html
d532e844e3b318110b846fc6c35e875c *html/getRegion.html
360d0000926d1776dd5afc39b144ac39 *html/importFromAlignedReads.html
3485dc99809d6d19f6d7a8c805b434b5 *html/importToExpData.html
ba67246dba26afdadd40bfb51b887fc9 *html/joinExpData.html
ab51d727c31d9afdbf9267d39aeb4836 *html/makeGeneRepresentation.html
54a48bfd7c4ad1ab611d959347b4149c *html/mergeWithAnnotation.html
1d7c20f15f06aed273fdc7e1dedd51b6 *html/plot.genominator.coverage.html
21699b47e5b2de2a6b336ad73a4de328 *html/plot.genominator.goodness.of.fit.html
a56a1c8d39f272dedfa65670cb6ce3d5 *html/regionGoodnessOfFit-methods.html
8075482d0e72889083c25030a7b3473c *html/splitByAnnotation.html
1deaf9605c841ecb962e01b5eaabf880 *html/summarizeByAnnotation.html
7c1248b9465636f04a06dc3e0a41bfbb *html/summarizeExpData.html
7888a4ea33e804446209345f545abe61 *html/validAnnotation.html
221fb52333ba2077259ada8358a1be88 *html/yeastAnno.html
862763ecbcbc50dd334a17ec6bb2fd8a *sample.db
7e049f5b6c468d78ad7fa82b55affaa5 *scripts/consistency.txt
a015d1b9430e4a51085982e200c24fca *scripts/import-marioni.sh
b2dfdbaa5c85151db09947ab2550a468 *scripts/pipeline-marioni.R
ba96868b64604b6ba7b178a06503086e *scripts/pipeline-marioni.sh
a0bd50f01f6e2bfe251cea9c72983eaf *scripts/pipeline-yeast1.sh
53a9b60c55b249540ee08fb72eb2721c *scripts/pipeline.sh
0c0efe8a6c41be6a96d496a4b03ecf34 *scripts/reshape-marioni.pl
d204b6b7dfaf9baf5a6c65234e75e05d *scripts/reshape-yeast1.pl
c450860e7db68ed870a96137487b4bdd *scripts/sqlimport.sh
d9fefd32f56e205c966693c1e115c275 *scripts/temp.R
